CX288920

Overview
NameCX288920
Unique NameCX288920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig160 contig Ccv1_Contig160:1..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 6.294e-13
Identity = 36/102 (35.29%), Postives = 53/102 (51.96%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            F+     RN     A GF+ Y +F+ A   ++  GFGTTG    + +E+ AFLA    +T+ G+  A  G  AWG C+  E   + +YC  S +  +PC PG
Sbjct:   86 FDRMLLHRNDGACQAKGFYTYDAFVAAASAFR--GFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQ--WPCAPG 183          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.074e-12
Identity = 39/111 (35.14%), Postives = 53/111 (47.75%), Query Frame = 2
Query:  251 ISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            IS+      F+     RN        F+ Y +FITA   ++  GFGTTG    + +E+ AF A    +T+ G+  A  G  AWG CY  E     SYC  S +  +PC PG
Sbjct:   85 ISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFR--GFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQ--WPCAPG 191          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.402e-12
Identity = 35/102 (34.31%), Postives = 51/102 (50.00%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            FE     RN     A GF+ Y++F+ A   +    FG TG    + +E+ AFL     +T+ G+  A  GP +WG C+  E +P   YC  S +  +PC PG
Sbjct:   98 FERLLLHRNDGACPARGFYTYEAFLAAAAAFP--AFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPE--WPCAPG 195          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.831e-12
Identity = 36/112 (32.14%), Postives = 55/112 (49.11%), Query Frame = 2
Query:  248 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            ++S      QF+     RN     A GF+ Y +F+ A   +   GFG TG+   + +++ AFLA    +T+ G+  A  G  AWG C+  E   +  YC  S +  +PC PG
Sbjct:   24 SVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFP--GFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQ--WPCAPG 131          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.392e-12
Identity = 38/102 (37.25%), Postives = 50/102 (49.02%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            F+     RN       GF+ Y +FI A   +   GFGTTG    K KE+ AFLA    +T+ G+  A  GP AWG C+  E +  + YC       +PC PG
Sbjct:   89 FDQMLKYRNDGRCAGHGFYTYDAFIAAARSFN--GFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPK---DWPCAPG 185          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            F+     RN     A GF+ Y +FI A   Y    FG TG    + +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  S    +PC PG
Sbjct:   85 FDQMLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-TYC--SATPQFPCAPG 181          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            F+     RN     A GF+ Y +FI A   Y    FG TG    + +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  S    +PC PG
Sbjct:   84 FDQVLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-AYC--SATPQFPCAPG 180          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.328e-12
Identity = 36/102 (35.29%), Postives = 49/102 (48.04%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            F+     RN       GF+ Y +FI A   +   GFGT+G    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S +  +PC PG
Sbjct:   84 FDQMLKHRNDNACQGKGFYSYNAFINAARSFP--GFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQ--WPCAPG 181          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.328e-12
Identity = 36/102 (35.29%), Postives = 49/102 (48.04%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            F+     RN       GF+ Y +FI A   +   GFGT+G    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S +  +PC PG
Sbjct:   89 FDQMLKHRNDNACQGKGFYSYNAFINAARSFP--GFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQ--WPCAPG 186          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 39/104 (37.50%), Postives = 53/104 (50.96%), Query Frame = 2
Query:  275 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            +F+     RN     A GF+ Y +FI A   +    F TTG    + +E+ AFLA    +T+ G G  A  GP  WG CYN E++P+  YC   +   YPC PG
Sbjct:   80 RFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFP--AFATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPA-DYC--QWDPNYPCAPG 178          
The following BLAST results are available for this feature:
BLAST of CX288920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CHI1_HORVU6.294e-1335.2926 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI3_TOBAC1.074e-1235.14Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_ORYSJ1.402e-1234.31Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SECCE1.831e-1232.14Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIX_PEA2.392e-1237.25Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIT_PHAVU3.124e-1238.24Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU4.080e-1238.24Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_TOBAC5.328e-1235.29Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC5.328e-1235.29Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_THECC6.959e-1237.50Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC02006H10SK IF1 Citrus clementina cDNA clone C02006H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288920 ID=CX288920; Name=CX288920; organism=Citrus clementina; type=EST; length=585bp
TCCCATTTCTCTCATCTTCCCCCAAGTGAATCTCGAAACAACAGGTAGAT
CTGGTGAGAACGAGAAAATGAAGATGAAGAATGGCAGTGTGGCAATAACA
CTGACAGTGGCACTAGTACTGGCACTGGCAGTGAGTTTGGCAAATGGAGA
TGAATCAGAGAAGGTGATAGTGAAGAAGGTGAAGGGGAAAAAAGTTTGCA
TAAAAGGGTGGGAGTGCCCAACATGGTCGAAATTCTGCTGTAACGAGACG
ATATCAGACTATTTCCAGGTTTACCAGTTTGAGAATTTCTTCTCGAAAAG
GAACACGCCGGTGGCACATGCCGTGGGATTCTGGGATTATCAGTCTTTCA
TTACTGCCACCGTCAAATATCAGCCCCTCGGCTTCGGTACCACCGGTACT
AAGCTTGATAAGATGAAGGAGATTTGCGCTTTTCTTGCCCACGTGGGCTG
CAAGACCTCTTGTGGATATGGAGTGGCCACTGGAGGACCATTGGCCTGGG
GACTTTGCTACAACCATGAAATGAGCCCCAGTCAGTCATATTGTGATGAT
TCCTACAAATACACATATCCCTGCACCCCTGGAGC
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