CX288924
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_YEAST (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae GN=IMP4 PE=1 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 7.184e-50 Identity = 93/193 (48.19%), Postives = 133/193 (68.91%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 578 F KE+K +FPNA R+NRG V+ +++ C+ TD+V++HEHRGVP L I H P GPTA F L NVV RHDI + G E PHLI DNF + LG+R ILKHLF PK D++R+ITFAN+ D+IS R H+Y + + +E+ E+GPRFE+RL++++LGT++ +A +EW +R ++ T+ K+ +L Sbjct: 103 FAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDI---INAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVRT--REGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_ASHGO (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya gossypii GN=IMP4 PE=3 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 1.355e-48 Identity = 90/193 (46.63%), Postives = 130/193 (67.36%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 578 F KE+K +FP + R+NRG ++ +++ C+ TD+V++HEHRGVP L I H P GPTA F L NVV RHDI + G E +PHLI DNF + LG+R ILKH+FP K D+ R+ITFAN+ D+IS R H+Y K +EL E+GPRFE++LY++ LGT++ +A +EW +R ++ T+ ++ +L Sbjct: 96 FAKEVKLLFPTSVRLNRGNYIMKNLVDACQKSGTTDLVVLHEHRGVPTALTISHFPHGPTASFSLHNVVLRHDI---LNAGNQSEVHPHLIFDNFTTPLGQRVVKILKHMFPPGVKRDSPRVITFANRGDFISVRQHVYVKT--RDGVELAEVGPRFEMKLYELTLGTLENKDADVEWQLRRFVRTANRKDYL 283
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: YUY1_CAEEL (Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=2 SV=4) HSP 1 Score: 152.525 bits (384), Expect = 1.554e-36 Identity = 82/194 (42.27%), Postives = 116/194 (59.79%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY-MNTSKKRKFL 578 F EL+ PN++ R ++ IIE + EFTD+++VHE R P+G+I CHLP GPTAYF + ++ D+K G +P +IL+NF ++LG A +L LFP PK +R++TF NQ DYI FRHH YE + L E+GPRF LRL ++ GT D + EWV++ + M TS++R FL Sbjct: 194 FCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLK---KFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRHHRYEFKKEGSKAALLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 384
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_DROME (Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 5.719e-31 Identity = 81/196 (41.33%), Postives = 113/196 (57.65%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIK-DRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLF-PVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVI--RPYMNTSKKRKFL 578 F EL +FPNA R + +I ++ EFTDVV+V+E R P+GL++ HLP GPTA+F L NV DIK D K I + P +IL+NF ++LG +L LF P+ +R +TF NQ DYI FRHH YE K ++L+E+GPRF L+L ++ GT D W+I + + S++R FL Sbjct: 202 FGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEI---TKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLRELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL 394
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_XENLA (Ribosome production factor 1 OS=Xenopus laevis GN=bxdc5 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 7.469e-31 Identity = 70/192 (36.46%), Postives = 115/192 (59.90%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF 575 F ++L + PN+ R G + +II C + ++TD+++++E R VP+GL++CHLP GPTA+F + NV R ++K + T E P +IL+NF ++LG + L+P P +++ TF NQ DYI FR+H Y + K + ++E+GPRF L+L ++ GT D + EWV + + + +RKF Sbjct: 153 FTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKEMKRKGKEPT--EHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFFRYHRYLFK-SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKRHEMDTSRRKF 341
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_PONAB (Ribosome production factor 1 OS=Pongo abelii GN=BXDC5 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 7.469e-31 Identity = 74/190 (38.95%), Postives = 112/190 (58.95%), Query Frame = 3 Query: 9 KELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF 575 ++L V PN+ R G + +II C A +FTD+++++E R P+GLI+ HLP GPTA+F + +V R +IK R T E P +IL+NF ++LG + LFP P+ +++ TF NQ DYI FR H Y + K + ++E+GPRF L+L ++ GT D + EWV +P + +RKF Sbjct: 161 EQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT--EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFR-SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKF 347
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_HUMAN (Ribosome production factor 1 OS=Homo sapiens GN=BXDC5 PE=1 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 7.469e-31 Identity = 74/190 (38.95%), Postives = 112/190 (58.95%), Query Frame = 3 Query: 9 KELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF 575 ++L V PN+ R G + +II C A +FTD+++++E R P+GLI+ HLP GPTA+F + +V R +IK R T E P +IL+NF ++LG + LFP P+ +++ TF NQ DYI FR H Y + K + ++E+GPRF L+L ++ GT D + EWV +P + +RKF Sbjct: 161 EQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT--EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFR-SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKF 347
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_MOUSE (Ribosome production factor 1 OS=Mus musculus GN=Bxdc5 PE=2 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 2.838e-30 Identity = 73/190 (38.42%), Postives = 112/190 (58.95%), Query Frame = 3 Query: 9 KELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF 575 ++L V P++ R G + +II C A +FTD+++++E R P+GLI+ HLP GPTA+F + +V R +IK R T E P +IL+NF ++LG + LFP P+ +++ TF NQ DYI FR H Y + K + ++E+GPRF L+L ++ GT D + EWV +P + +RKF Sbjct: 161 EQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT--EHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFK-SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKF 347
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_DANRE (Ribosome production factor 1 OS=Danio rerio GN=bxdc5 PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 2.656e-28 Identity = 70/192 (36.46%), Postives = 112/192 (58.33%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF 575 F +L V P+A R G + ++I C + FT +++++E R VP+G+++CHLP GPTA+F + +V R ++K R T E P +IL+NF ++LG + LFP P+ +++ TF NQ D+I FR H Y + K + ++E+GPRF L+L ++ GT D + EWV + + S +RKF Sbjct: 140 FCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKNPT--EHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFRFHRYIFK-NEKKVGIQELGPRFTLKLRSLQKGTFDSKFGEYEWVHKRHEMDSSRRKF 328
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_RAT (Ribosome production factor 1 OS=Rattus norvegicus GN=Bxdc5 PE=2 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 3.469e-28 Identity = 69/177 (38.98%), Postives = 105/177 (59.32%), Query Frame = 3 Query: 9 KELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWV 536 ++L V P++ R G + +II C A +FTD+++++E R P+GLI+ HLP GPTA+F + +V R +IK R T E P +IL+NF ++LG + LFP P+ +++ TF NQ DYI FR H Y + K + ++E+GPRF L+L ++ GT D + EWV Sbjct: 161 EQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT--EHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFK-SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWV 334 The following BLAST results are available for this feature:
BLAST of CX288924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288924 ID=CX288924; Name=CX288924; organism=Citrus clementina; type=EST; length=617bpback to top |