CX288924

Overview
NameCX288924
Unique NameCX288924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1011 contig Ccv1_Contig1011:356..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_YEAST (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae GN=IMP4 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.184e-50
Identity = 93/193 (48.19%), Postives = 133/193 (68.91%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 578
            F KE+K +FPNA R+NRG  V+  +++ C+    TD+V++HEHRGVP  L I H P GPTA F L NVV RHDI    + G   E  PHLI DNF + LG+R   ILKHLF   PK D++R+ITFAN+ D+IS R H+Y +    + +E+ E+GPRFE+RL++++LGT++  +A +EW +R ++ T+ K+ +L
Sbjct:  103 FAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDI---INAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVRT--REGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_ASHGO (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya gossypii GN=IMP4 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.355e-48
Identity = 90/193 (46.63%), Postives = 130/193 (67.36%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 578
            F KE+K +FP + R+NRG  ++  +++ C+    TD+V++HEHRGVP  L I H P GPTA F L NVV RHDI    + G   E +PHLI DNF + LG+R   ILKH+FP   K D+ R+ITFAN+ D+IS R H+Y K      +EL E+GPRFE++LY++ LGT++  +A +EW +R ++ T+ ++ +L
Sbjct:   96 FAKEVKLLFPTSVRLNRGNYIMKNLVDACQKSGTTDLVVLHEHRGVPTALTISHFPHGPTASFSLHNVVLRHDI---LNAGNQSEVHPHLIFDNFTTPLGQRVVKILKHMFPPGVKRDSPRVITFANRGDFISVRQHVYVKT--RDGVELAEVGPRFEMKLYELTLGTLENKDADVEWQLRRFVRTANRKDYL 283          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: YUY1_CAEEL (Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=2 SV=4)

HSP 1 Score: 152.525 bits (384), Expect = 1.554e-36
Identity = 82/194 (42.27%), Postives = 116/194 (59.79%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY-MNTSKKRKFL 578
            F  EL+   PN++   R   ++  IIE  +  EFTD+++VHE R  P+G+I CHLP GPTAYF + ++    D+K     G     +P +IL+NF ++LG   A +L  LFP  PK   +R++TF NQ DYI FRHH YE +       L E+GPRF LRL  ++ GT D    + EWV++ + M TS++R FL
Sbjct:  194 FCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLK---KFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRHHRYEFKKEGSKAALLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 384          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_DROME (Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.719e-31
Identity = 81/196 (41.33%), Postives = 113/196 (57.65%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIK-DRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLF-PVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVI--RPYMNTSKKRKFL 578
            F  EL  +FPNA    R    + +I ++    EFTDVV+V+E R  P+GL++ HLP GPTA+F L NV    DIK D K I    +  P +IL+NF ++LG     +L  LF   P+   +R +TF NQ DYI FRHH YE     K ++L+E+GPRF L+L  ++ GT D       W+I  + +   S++R FL
Sbjct:  202 FGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEI---TKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLRELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL 394          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_XENLA (Ribosome production factor 1 OS=Xenopus laevis GN=bxdc5 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.469e-31
Identity = 70/192 (36.46%), Postives = 115/192 (59.90%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF 575
            F ++L  + PN+    R G  + +II  C + ++TD+++++E R VP+GL++CHLP GPTA+F + NV  R ++K +    T  E  P +IL+NF ++LG     +   L+P  P    +++ TF NQ DYI FR+H Y  +   K + ++E+GPRF L+L  ++ GT D    + EWV + +   + +RKF
Sbjct:  153 FTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKEMKRKGKEPT--EHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFFRYHRYLFK-SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKRHEMDTSRRKF 341          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_PONAB (Ribosome production factor 1 OS=Pongo abelii GN=BXDC5 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.469e-31
Identity = 74/190 (38.95%), Postives = 112/190 (58.95%), Query Frame = 3
Query:    9 KELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF 575
            ++L  V PN+    R G  + +II  C A +FTD+++++E R  P+GLI+ HLP GPTA+F + +V  R +IK R    T  E  P +IL+NF ++LG     +   LFP  P+   +++ TF NQ DYI FR H Y  +   K + ++E+GPRF L+L  ++ GT D    + EWV +P    + +RKF
Sbjct:  161 EQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT--EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFR-SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKF 347          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_HUMAN (Ribosome production factor 1 OS=Homo sapiens GN=BXDC5 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 7.469e-31
Identity = 74/190 (38.95%), Postives = 112/190 (58.95%), Query Frame = 3
Query:    9 KELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF 575
            ++L  V PN+    R G  + +II  C A +FTD+++++E R  P+GLI+ HLP GPTA+F + +V  R +IK R    T  E  P +IL+NF ++LG     +   LFP  P+   +++ TF NQ DYI FR H Y  +   K + ++E+GPRF L+L  ++ GT D    + EWV +P    + +RKF
Sbjct:  161 EQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT--EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFR-SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKF 347          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_MOUSE (Ribosome production factor 1 OS=Mus musculus GN=Bxdc5 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.838e-30
Identity = 73/190 (38.42%), Postives = 112/190 (58.95%), Query Frame = 3
Query:    9 KELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF 575
            ++L  V P++    R G  + +II  C A +FTD+++++E R  P+GLI+ HLP GPTA+F + +V  R +IK R    T  E  P +IL+NF ++LG     +   LFP  P+   +++ TF NQ DYI FR H Y  +   K + ++E+GPRF L+L  ++ GT D    + EWV +P    + +RKF
Sbjct:  161 EQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT--EHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFK-SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKF 347          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_DANRE (Ribosome production factor 1 OS=Danio rerio GN=bxdc5 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.656e-28
Identity = 70/192 (36.46%), Postives = 112/192 (58.33%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF 575
            F  +L  V P+A    R G  + ++I  C +  FT +++++E R VP+G+++CHLP GPTA+F + +V  R ++K R    T  E  P +IL+NF ++LG     +   LFP  P+   +++ TF NQ D+I FR H Y  +   K + ++E+GPRF L+L  ++ GT D    + EWV + +   S +RKF
Sbjct:  140 FCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKNPT--EHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFRFHRYIFK-NEKKVGIQELGPRFTLKLRSLQKGTFDSKFGEYEWVHKRHEMDSSRRKF 328          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: RPF1_RAT (Ribosome production factor 1 OS=Rattus norvegicus GN=Bxdc5 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.469e-28
Identity = 69/177 (38.98%), Postives = 105/177 (59.32%), Query Frame = 3
Query:    9 KELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWV 536
            ++L  V P++    R G  + +II  C A +FTD+++++E R  P+GLI+ HLP GPTA+F + +V  R +IK R    T  E  P +IL+NF ++LG     +   LFP  P+   +++ TF NQ DYI FR H Y  +   K + ++E+GPRF L+L  ++ GT D    + EWV
Sbjct:  161 EQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT--EHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFK-SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWV 334          
The following BLAST results are available for this feature:
BLAST of CX288924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
IMP4_YEAST7.184e-5048.19U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_ASHGO1.355e-4846.63U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
YUY1_CAEEL1.554e-3642.27Brix domain-containing protein F44G4.1 OS=Caenorha... [more]
RPF1_DROME5.719e-3141.33Probable ribosome production factor 1 OS=Drosophil... [more]
RPF1_XENLA7.469e-3136.46Ribosome production factor 1 OS=Xenopus laevis GN=... [more]
RPF1_PONAB7.469e-3138.95Ribosome production factor 1 OS=Pongo abelii GN=BX... [more]
RPF1_HUMAN7.469e-3138.95Ribosome production factor 1 OS=Homo sapiens GN=BX... [more]
RPF1_MOUSE2.838e-3038.42Ribosome production factor 1 OS=Mus musculus GN=Bx... [more]
RPF1_DANRE2.656e-2836.46Ribosome production factor 1 OS=Danio rerio GN=bxd... [more]
RPF1_RAT3.469e-2838.98Ribosome production factor 1 OS=Rattus norvegicus ... [more]

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Properties
Property NameValue
Genbank descriptionC02007A03SK IF1 Citrus clementina cDNA clone C02007A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288924 ID=CX288924; Name=CX288924; organism=Citrus clementina; type=EST; length=617bp
AGTTTGTAAAGGAGTTGAAGTTTGTCTTTCCTAATGCACAAAGAATGAAT
CGTGGAGGCCAGGTCATATCTGAAATTATTGAAACTTGTCGTGCACATGA
GTTTACAGATGTTGTGTTGGTTCATGAACATCGTGGTGTGCCAGACGGTT
TAATAATATGTCATTTACCTTTTGGCCCAACTGCCTACTTTGGATTACTC
AATGTGGTTACCAGACATGATATTAAGGACAGAAAATCCATTGGTACAAT
GCCTGAGGCTTACCCACATCTGATTCTCGACAACTTCAAATCCAAGCTAG
GTGAAAGGACAGCAAACATTCTAAAACATCTATTTCCAGTGCCAAAGGCT
GATACCAAACGTATCATCACTTTTGCAAATCAGTCTGACTATATTTCATT
CAGGCATCATATATATGAGAAACAAGGAGGCCCAAAGTCACTTGAGCTGA
AGGAAATTGGTCCTCGGTTTGAATTGCGGCTTTATCAGATAAAGTTAGGA
ACAGTTGATCAGAGTGAAGCCCAGATCGAATGGGTAATCAGGCCTTACAT
GAACACAAGCAAGAAGCGAAAATTCCTTGGGGATTGACAACCAATCAACC
ACTAAAATGATATTGAG
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