CX288927

Overview
NameCX288927
Unique NameCX288927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length571
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288927_ssr475 microsatellite CX288927_ssr475:475..486. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig158 contig Ccv1_Contig158:82..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_PONAB (Nascent polypeptide-associated complex subunit alpha OS=Pongo abelii GN=NACA PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.691e-15
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETDVEVKDIELVMSQA 188          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_MOUSE (Nascent polypeptide-associated complex subunit alpha OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.691e-15
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQA 188          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_HUMAN (Nascent polypeptide-associated complex subunit alpha OS=Homo sapiens GN=NACA PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.691e-15
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQA 188          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_BOVIN (Nascent polypeptide-associated complex subunit alpha OS=Bos taurus GN=NACA PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.691e-15
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQA 188          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACAM_MOUSE (Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.691e-15
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA
Sbjct: 2051 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQA 2160          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACAD_HUMAN (NAC-alpha domain-containing protein 1 OS=Homo sapiens GN=NACAD PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.691e-15
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVM 455
            AM KLG++ + GV+R+TI+++KNILF I+KPDVFKSP S+TYV+FGEAKIED            F++P   S +
Sbjct: 1420 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSAL 1493          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_CHILA (Nascent polypeptide-associated complex subunit alpha OS=Chinchilla lanigera PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.209e-15
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 130          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_CAEEL (Nascent polypeptide-associated complex subunit alpha OS=Caenorhabditis elegans GN=Y65B4BR.5 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.885e-15
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 3
Query:  243 KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            KLG+K VTGVSRV I+++KNILF I+KPDVFKSP S+TY+IFGEAKIED
Sbjct:   68 KLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDTYIIFGEAKIED 116          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_CAEBR (Nascent polypeptide-associated complex subunit alpha OS=Caenorhabditis briggsae GN=CBG05114 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.885e-15
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 3
Query:  243 KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            KLG+K VTGVSRV I+++KNILF I+KPDVFKSP S+TY+IFGEAKIED
Sbjct:   70 KLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDTYIIFGEAKIED 118          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_DROME (Nascent polypeptide-associated complex subunit alpha OS=Drosophila melanogaster GN=Nacalpha PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.921e-15
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 3
Query:  237 MLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPD 440
            MLKLG+K + GV+RVTI+++KNILF I+ PDV+K+P+S+TY++FGEAKIED            F+ P+
Sbjct:   80 MLKLGLKQIQGVNRVTIRKSKNILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAAAEKFKAPE 147          
The following BLAST results are available for this feature:
BLAST of CX288927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA_PONAB1.691e-1541.07Nascent polypeptide-associated complex subunit alp... [more]
NACA_MOUSE1.691e-1541.07Nascent polypeptide-associated complex subunit alp... [more]
NACA_HUMAN1.691e-1541.07Nascent polypeptide-associated complex subunit alp... [more]
NACA_BOVIN1.691e-1541.07Nascent polypeptide-associated complex subunit alp... [more]
NACAM_MOUSE1.691e-1541.07Nascent polypeptide-associated complex subunit alp... [more]
NACAD_HUMAN1.691e-1552.70NAC-alpha domain-containing protein 1 OS=Homo sapi... [more]
NACA_CHILA2.209e-1571.15Nascent polypeptide-associated complex subunit alp... [more]
NACA_CAEEL2.885e-1577.55Nascent polypeptide-associated complex subunit alp... [more]
NACA_CAEBR2.885e-1577.55Nascent polypeptide-associated complex subunit alp... [more]
NACA_DROME4.921e-1552.94Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC02007A06SK IF1 Citrus clementina cDNA clone C02007A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288927 ID=CX288927; Name=CX288927; organism=Citrus clementina; type=EST; length=571bp
ATTTTATCAAAATGTCGCCACCAGCTCCCATCGTTGAGACACCAGTCGAG
GAACCTGAAAAAATTAAGCCTCAGGATGAGGATGAGCCTGTAGTTGAAGA
TGTTAAGGACGATGAGGAAGAAGATGATGACCACGACAATGACGATGATG
ACGAGGACGACGATGACAACAAAGACGATGGAGCTCAAGGAGGGAGTTCA
AAGCAGAGCAGAAGTGAGAAAAAGAGCCGCAAGGCAATGCTGAAGTTGGG
CATGAAACCTGTAACAGGAGTTAGCAGGGTAACCATCAAGAGAACCAAAA
ATATACTATTTTTCATCTCAAAGCCTGATGTTTTCAAGAGCCCAAATTCT
GAAACGTACGTCATATTTGGGGAAGCCAAAATAGAGGATTTGAGCTCCCA
GCTGCAGACACAGGCTGCCCAGCAGTTCAGGATGCCTGACATGGGATCGG
TGATGGCGAAACCAGATGCCTCTTCTGCTGCTGCTGGTGCACAACAAGAT
GAGGAAGAGGAGGAAGTTGATGAGACGGGAGTTGAGCCTCGGGACATTGA
TTTGGTCATGACACAGGCCGG
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