CX288927

Overview
NameCX288927
Unique NameCX288927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length571
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288927_ssr475 microsatellite CX288927_ssr475:475..486. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig158 contig Ccv1_Contig158:82..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_DANRE (Nascent polypeptide-associated complex subunit alpha OS=Danio rerio GN=naca PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15
Identity = 45/112 (40.18%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQA 569
            AM KLG++ V GV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++   G  ++                           +DI+LVM+QA
Sbjct:   79 AMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQA 188          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACP1_HUMAN (Putative nascent polypeptide-associated complex subunit alpha-like protein OS=Homo sapiens GN=NACAP1 PE=5 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14
Identity = 36/52 (69.23%), Postives = 47/52 (90.38%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A  KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct:   78 ARFKLGLQQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYMVFGEAKIED 129          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_BABDI (Nascent polypeptide-associated complex subunit alpha OS=Babesia divergens PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.281e-14
Identity = 34/49 (69.39%), Postives = 43/49 (87.76%), Query Frame = 3
Query:  243 KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            KLGMKPV GV++V IK++K I F ++KPDV+K PNS+TYVIFGEAK+ED
Sbjct:   48 KLGMKPVDGVTKVCIKKSKQIYFVVNKPDVYKLPNSDTYVIFGEAKVED 96          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_PHANO (Nascent polypeptide-associated complex subunit alpha OS=Phaeosphaeria nodorum GN=EGD2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.068e-13
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A+ KLG+K + G++RVT++R KNILF I++PDV+KSP+S T++IFGEAKIED
Sbjct:   57 AIAKLGLKHIDGITRVTLRRPKNILFVINQPDVYKSPSSNTWIIFGEAKIED 108          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_NEOFI (Nascent polypeptide-associated complex subunit alpha OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=egd2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIED 106          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_EMENI (Nascent polypeptide-associated complex subunit alpha OS=Emericella nidulans GN=egd2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIED 106          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_COCIM (Nascent polypeptide-associated complex subunit alpha OS=Coccidioides immitis GN=EGD2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED
Sbjct:   57 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIED 108          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_ASPOR (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus oryzae GN=egd2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED
Sbjct:   54 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIED 105          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_ASPNC (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=egd2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIED 106          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_ASPFU (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus fumigatus GN=egd2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIED 106          
The following BLAST results are available for this feature:
BLAST of CX288927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA_DANRE6.427e-1540.18Nascent polypeptide-associated complex subunit alp... [more]
NACP1_HUMAN1.432e-1469.23Putative nascent polypeptide-associated complex su... [more]
NACA_BABDI9.281e-1469.39Nascent polypeptide-associated complex subunit alp... [more]
NACA_PHANO2.068e-1363.46Nascent polypeptide-associated complex subunit alp... [more]
NACA_NEOFI7.857e-1363.46Nascent polypeptide-associated complex subunit alp... [more]
NACA_EMENI7.857e-1363.46Nascent polypeptide-associated complex subunit alp... [more]
NACA_COCIM7.857e-1363.46Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPOR7.857e-1363.46Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPNC7.857e-1363.46Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPFU7.857e-1363.46Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC02007A06SK IF1 Citrus clementina cDNA clone C02007A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288927 ID=CX288927; Name=CX288927; organism=Citrus clementina; type=EST; length=571bp
ATTTTATCAAAATGTCGCCACCAGCTCCCATCGTTGAGACACCAGTCGAG
GAACCTGAAAAAATTAAGCCTCAGGATGAGGATGAGCCTGTAGTTGAAGA
TGTTAAGGACGATGAGGAAGAAGATGATGACCACGACAATGACGATGATG
ACGAGGACGACGATGACAACAAAGACGATGGAGCTCAAGGAGGGAGTTCA
AAGCAGAGCAGAAGTGAGAAAAAGAGCCGCAAGGCAATGCTGAAGTTGGG
CATGAAACCTGTAACAGGAGTTAGCAGGGTAACCATCAAGAGAACCAAAA
ATATACTATTTTTCATCTCAAAGCCTGATGTTTTCAAGAGCCCAAATTCT
GAAACGTACGTCATATTTGGGGAAGCCAAAATAGAGGATTTGAGCTCCCA
GCTGCAGACACAGGCTGCCCAGCAGTTCAGGATGCCTGACATGGGATCGG
TGATGGCGAAACCAGATGCCTCTTCTGCTGCTGCTGGTGCACAACAAGAT
GAGGAAGAGGAGGAAGTTGATGAGACGGGAGTTGAGCCTCGGGACATTGA
TTTGGTCATGACACAGGCCGG
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