CX288927

Overview
NameCX288927
Unique NameCX288927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length571
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288927_ssr475 microsatellite CX288927_ssr475:475..486. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig158 contig Ccv1_Contig158:82..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_ASPCL (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus clavatus GN=egd2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP S T++IFGEAKIED
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPTSNTWIIFGEAKIED 106          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_NEUCR (Nascent polypeptide-associated complex subunit alpha OS=Neurospora crassa GN=egd-2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.286e-12
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A+ KL ++ V G++RVT++R KNILF I+ P+V+KSPNS TY++FGEAKIED
Sbjct:   58 AIEKLHLQRVPGITRVTLRRPKNILFVINNPEVYKSPNSNTYIVFGEAKIED 109          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_BOTFB (Nascent polypeptide-associated complex subunit alpha OS=Botryotinia fuckeliana (strain B05.10) GN=egd2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.286e-12
Identity = 31/52 (59.62%), Postives = 44/52 (84.62%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            ++ KLG+  V G++RVT++R KNILF I++P+V+KSP S TY++FGEAKIED
Sbjct:   60 SIAKLGLTRVPGITRVTLRRPKNILFVINQPEVYKSPTSNTYIVFGEAKIED 111          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_SCLS1 (Nascent polypeptide-associated complex subunit alpha OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=egd2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            ++ KLG+  V G++RVT++R KNILF I+ P+V+KSP S TY++FGEAKIED
Sbjct:   61 SIAKLGLTRVPGITRVTLRRPKNILFVINNPEVYKSPTSNTYIVFGEAKIED 112          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA2_HUMAN (Nascent polypeptide-associated complex subunit alpha-2 OS=Homo sapiens GN=NACA2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            AM KLG+  VTGV+RVTI ++KNILF I+K DV+KSP S+ Y++FGEAKI+D
Sbjct:   79 AMSKLGLLQVTGVTRVTIWKSKNILFVITKLDVYKSPASDAYIVFGEAKIQD 130          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_CHAGB (Nascent polypeptide-associated complex subunit alpha OS=Chaetomium globosum GN=EGD2 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.899e-12
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A+ KL +  V G++RVT++R KNILF I+ P+V+KSPNS TY++FGEAKIED
Sbjct:   58 AIEKLHLTRVPGITRVTLRRPKNILFVINNPEVYKSPNSNTYIVFGEAKIED 109          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_AJECN (Nascent polypeptide-associated complex subunit alpha OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=EGD2 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.899e-12
Identity = 32/52 (61.54%), Postives = 45/52 (86.54%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A+ KLG+K V G++RVT++R K ILF I++PDV++SP+S T++IFGEAKIED
Sbjct:   57 AIGKLGLKHVPGITRVTLRRPKGILFVINQPDVYRSPSSNTWIIFGEAKIED 108          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_GIBZE (Nascent polypeptide-associated complex subunit alpha OS=Gibberella zeae GN=EGD2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A+ KL +  + G++RVT++R KNILF I+ P+V+KSPNS TY++FGEAKIED
Sbjct:   58 ALEKLHLTRIPGITRVTLRRPKNILFVINTPEVYKSPNSNTYIVFGEAKIED 109          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_ASPTN (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=egd2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 32/52 (61.54%), Postives = 45/52 (86.54%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A+ KLG+K V G++RVT +R KNILF I++P+V++SP+S T++IFGEAKIED
Sbjct:   55 AIGKLGLKLVPGITRVTFRRPKNILFVINQPEVYRSPSSNTWIIFGEAKIED 106          
BLAST of CX288927 vs. ExPASy Swiss-Prot
Match: NACA_MAGGR (Nascent polypeptide-associated complex subunit alpha OS=Magnaporthe grisea GN=EGD2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.134e-11
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 3
Query:  234 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 389
            A+ KL +  V G++RVT++R KNILF I+ P+V+KSPNS TY++FGEAKIED
Sbjct:   57 AIEKLHLIRVDGITRVTLRRPKNILFVINNPEVYKSPNSGTYIVFGEAKIED 108          
The following BLAST results are available for this feature:
BLAST of CX288927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA_ASPCL1.026e-1263.46Nascent polypeptide-associated complex subunit alp... [more]
NACA_NEUCR2.286e-1261.54Nascent polypeptide-associated complex subunit alp... [more]
NACA_BOTFB2.286e-1259.62Nascent polypeptide-associated complex subunit alp... [more]
NACA_SCLS12.985e-1259.62Nascent polypeptide-associated complex subunit alp... [more]
NACA2_HUMAN2.985e-1265.38Nascent polypeptide-associated complex subunit alp... [more]
NACA_CHAGB3.899e-1261.54Nascent polypeptide-associated complex subunit alp... [more]
NACA_AJECN3.899e-1261.54Nascent polypeptide-associated complex subunit alp... [more]
NACA_GIBZE5.092e-1259.62Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPTN5.092e-1261.54Nascent polypeptide-associated complex subunit alp... [more]
NACA_MAGGR1.134e-1161.54Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC02007A06SK IF1 Citrus clementina cDNA clone C02007A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288927 ID=CX288927; Name=CX288927; organism=Citrus clementina; type=EST; length=571bp
ATTTTATCAAAATGTCGCCACCAGCTCCCATCGTTGAGACACCAGTCGAG
GAACCTGAAAAAATTAAGCCTCAGGATGAGGATGAGCCTGTAGTTGAAGA
TGTTAAGGACGATGAGGAAGAAGATGATGACCACGACAATGACGATGATG
ACGAGGACGACGATGACAACAAAGACGATGGAGCTCAAGGAGGGAGTTCA
AAGCAGAGCAGAAGTGAGAAAAAGAGCCGCAAGGCAATGCTGAAGTTGGG
CATGAAACCTGTAACAGGAGTTAGCAGGGTAACCATCAAGAGAACCAAAA
ATATACTATTTTTCATCTCAAAGCCTGATGTTTTCAAGAGCCCAAATTCT
GAAACGTACGTCATATTTGGGGAAGCCAAAATAGAGGATTTGAGCTCCCA
GCTGCAGACACAGGCTGCCCAGCAGTTCAGGATGCCTGACATGGGATCGG
TGATGGCGAAACCAGATGCCTCTTCTGCTGCTGCTGGTGCACAACAAGAT
GAGGAAGAGGAGGAAGTTGATGAGACGGGAGTTGAGCCTCGGGACATTGA
TTTGGTCATGACACAGGCCGG
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