CX288942
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2AF2_DROME (Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.776e-28 Identity = 67/136 (49.26%), Postives = 84/136 (61.76%), Query Frame = 2 Query: 5 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412 FAF+E RS++E + AMA DGI +G +K+RRP DY P T P + A V S + P +IF+GGLP Y + Q++ELL SFG LR F+LVKD TG SKGYAFC Y DLS+TD A LNG+ Sbjct: 141 FAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPMPGIT-----DTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGM 271
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2AF2_CAEBR (Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae GN=uaf-1 PE=3 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 3.467e-24 Identity = 64/136 (47.06%), Postives = 84/136 (61.76%), Query Frame = 2 Query: 5 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412 FAF+E RS++E + MA DGI F G +KVRRP DY PSQ ++N P S+ ++ ++IF+GGLP Y TE Q++ELL SFGPL+ F L D + GNSKGYAF Y D ++TD A LNG+ Sbjct: 223 FAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQ--------PSQNTFDMN----ARMPVSSIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQ-GNSKGYAFAEYLDPTLTDQAIAGLNGM 345
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2AF2_CAEEL (Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans GN=uaf-1 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 4.528e-24 Identity = 64/136 (47.06%), Postives = 83/136 (61.03%), Query Frame = 2 Query: 5 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412 FAF+E RS++E + MA DGI F G +KVRRP DY PSQ ++N P S ++ ++IF+GGLP Y TE Q++ELL SFGPL+ F L D + GNSKGYAF Y D ++TD A LNG+ Sbjct: 232 FAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQ--------PSQNTFDMN----SRMPVSTIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQ-GNSKGYAFAEYLDPTLTDQAIAGLNGM 354 The following BLAST results are available for this feature:
BLAST of CX288942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288942 ID=CX288942; Name=CX288942; organism=Citrus clementina; type=EST; length=413bpback to top |