CX288942

Overview
NameCX288942
Unique NameCX288942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6678 contig Ccv1_Contig6678:978..1390. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2AF2_DROME (Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.776e-28
Identity = 67/136 (49.26%), Postives = 84/136 (61.76%), Query Frame = 2
Query:    5 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412
            FAF+E RS++E + AMA DGI  +G  +K+RRP DY P    T       P +  A V     S    + P +IF+GGLP Y  + Q++ELL SFG LR F+LVKD  TG SKGYAFC Y DLS+TD   A LNG+
Sbjct:  141 FAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPMPGIT-----DTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGM 271          
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2AF2_CAEBR (Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae GN=uaf-1 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.467e-24
Identity = 64/136 (47.06%), Postives = 84/136 (61.76%), Query Frame = 2
Query:    5 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412
            FAF+E RS++E +  MA DGI F G  +KVRRP DY         PSQ   ++N       P S+  ++  ++IF+GGLP Y TE Q++ELL SFGPL+ F L  D + GNSKGYAF  Y D ++TD   A LNG+
Sbjct:  223 FAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQ--------PSQNTFDMN----ARMPVSSIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQ-GNSKGYAFAEYLDPTLTDQAIAGLNGM 345          
BLAST of CX288942 vs. ExPASy Swiss-Prot
Match: U2AF2_CAEEL (Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans GN=uaf-1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.528e-24
Identity = 64/136 (47.06%), Postives = 83/136 (61.03%), Query Frame = 2
Query:    5 FAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIG*AALNGI 412
            FAF+E RS++E +  MA DGI F G  +KVRRP DY         PSQ   ++N       P S   ++  ++IF+GGLP Y TE Q++ELL SFGPL+ F L  D + GNSKGYAF  Y D ++TD   A LNG+
Sbjct:  232 FAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQ--------PSQNTFDMN----SRMPVSTIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQ-GNSKGYAFAEYLDPTLTDQAIAGLNGM 354          
The following BLAST results are available for this feature:
BLAST of CX288942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
U2AF2_DROME1.776e-2849.26Splicing factor U2AF 50 kDa subunit OS=Drosophila ... [more]
U2AF2_CAEBR3.467e-2447.06Splicing factor U2AF 65 kDa subunit OS=Caenorhabdi... [more]
U2AF2_CAEEL4.528e-2447.06Splicing factor U2AF 65 kDa subunit OS=Caenorhabdi... [more]

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Properties
Property NameValue
Genbank descriptionC02007B11SK IF1 Citrus clementina cDNA clone C02007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288942 ID=CX288942; Name=CX288942; organism=Citrus clementina; type=EST; length=413bp
GAAGTTTGCCTTTGTGGAGATGAGATCTGTGGAGGAAGCCAGTAATGCTA
TGGCTTTAGATGGAATTATTTTTGAGGGAGCCCCTGTGAAGGTGAGGAGA
CCCAGTGACTATAACCCATCTCTTGCTGCAACACTTGGTCCCAGCCAGCC
CAATCCCAATCTTAACCTGGCTGCTGTTGGTCTAACACCTGGTTCCGCTG
GTGGGCTTGAGGGTCCAGACCGCATTTTTGTCGGTGGGCTCCCCTATTAC
TTCACAGAAGCACAGATCAGGGAATTGTTGGAGTCTTTTGGGCCCCTGCG
TGGTTTTGATCTAGTTAAAGATAGAGAAACTGGAAACTCAAAGGGCTATG
CGTTTTGTGTTTACCAAGATCTTTCAGTTACAGATATAGGATGAGCTGCC
TTGAATGGGATTA
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