CX288945

Overview
NameCX288945
Unique NameCX288945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig162 contig Ccv1_Contig162:1..553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: SAR1_ASPTN (Small COPII coat GTPase sar1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sar1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.132e-20
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 3
Query:   87 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 479
            K  ++L +GLD AGKTT+L+ LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL     L+  NK D P+A++  E+  +LGL+
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDYERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLY 149          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: AR13B_DANRE (ADP-ribosylation factor-like protein 13B OS=Danio rerio GN=arl13b PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.008e-20
Identity = 47/133 (35.34%), Postives = 79/133 (59.40%), Query Frame = 3
Query:   87 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 485
            +++ ++MVGLD AGKT  +  ++    +   PT+GF+   ++      T++D+GG  +IR +W++Y+  + G++FVVDS+D  R+ E RD +  +L    +    +LV ANKQD   AM  A+I + L L  L
Sbjct:   20 RKVTLVMVGLDNAGKTATVRGIQGESPLDVAPTVGFSKVDLKQGKFEVTIFDLGGGKRIRGIWKNYYSESYGVVFVVDSSDVQRIQETRDTMAEVLRHPRIAGKPVLVLANKQDQDGAMAEADIIETLSLEKL 152          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: AR13B_HUMAN (ADP-ribosylation factor-like protein 13B OS=Homo sapiens GN=ARL13B PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.046e-19
Identity = 52/153 (33.99%), Postives = 84/153 (54.90%), Query Frame = 3
Query:   87 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH---WYIQSTCATSGEG 536
            +++ +LMVGLD AGKT     ++        PT+GF+   +       T++D+GG  +IR +W++Y+  + G+IFVVDS+D +R+ E ++ +  ML    +    +LV ANKQD   A+  A++ + L L  L   H     I+   A SG G
Sbjct:   20 RKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINLRQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYG 172          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: SAR1_ASHGO (Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.366e-19
Identity = 50/130 (38.46%), Postives = 75/130 (57.69%), Query Frame = 3
Query:   87 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 476
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   +I FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  +    EL+    ++  NK D P+A++  E+   LGL
Sbjct:   22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGSIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADSERFNEARVELDALFQIPELKTVPFVILGNKIDAPSAVSETELRAALGL 151          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.366e-19
Identity = 49/130 (37.69%), Postives = 78/130 (60.00%), Query Frame = 3
Query:   48 LSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 437
            LSF  L++     K  +IL +GLD AGKTT+L  LK G + + +PT     E +   NI F  +D+GG +  R LW+ Y+ +   +++++DS+ +DR VE++ EL  +L+ DEL +   L+  NK D+ N
Sbjct:   11 LSFLGLYN-----KNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELAMGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDELANVPFLILGNKVDIGN 135          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.784e-19
Identity = 52/130 (40.00%), Postives = 74/130 (56.92%), Query Frame = 3
Query:   87 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 476
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   NI FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  +    EL +    V  NK D P+A++  E+   LGL
Sbjct:   22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHLQARRLWKDYFPEVNGIVFLVDAADPERFNEARIELDALFQIKELDNVPFAVLGNKIDSPSAVSETELRAALGL 151          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: ARL15_BOVIN (ADP-ribosylation factor-like protein 15 OS=Bos taurus GN=ARL15 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.330e-19
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 3
Query:   81 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS-NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGL 539
            A+ E  ++ +GL  +GKT++L KL      + + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV+DS +  D +  AR+ELH  L   +L     L+ AN QD P A +  E+     L  L R + W +Q       E L
Sbjct:   29 ARPEYDLVCIGLTGSGKTSLLSKLCSESPDSVVSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEVKKYFELEPLARGKRWILQPCSLDDMEAL 183          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.043e-19
Identity = 49/130 (37.69%), Postives = 75/130 (57.69%), Query Frame = 3
Query:   87 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 476
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   N+ FT +D+GG ++ R +W+ YF    G++++VD  D +R  E+R EL  +L  +EL    +LV  NK D   A++  E+   LGL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELSIGNVRFTTFDLGGHEQARRVWKDYFPEVDGIVYLVDIADPERFEESRVELDALLKIEELSKVPVLVLGNKIDKSTAVSENELRHALGL 148          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: ARL15_PONAB (ADP-ribosylation factor-like protein 15 OS=Pongo abelii GN=ARL15 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.043e-19
Identity = 53/145 (36.55%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   81 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS-NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQ 509
            A+ E  ++ +GL  +GKT++L KL        + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV+DS +  D +  AR+ELH  L   +L     L+ AN QD P A +  EI     L  L R + W +Q
Sbjct:   29 ARPEYDLVCIGLTGSGKTSLLSKLCSESPDNVVSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQ 173          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: ARL15_HUMAN (ADP-ribosylation factor-like protein 15 OS=Homo sapiens GN=ARL15 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.043e-19
Identity = 53/145 (36.55%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   81 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS-NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQ 509
            A+ E  ++ +GL  +GKT++L KL        + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV+DS +  D +  AR+ELH  L   +L     L+ AN QD P A +  EI     L  L R + W +Q
Sbjct:   29 ARPEYDLVCIGLTGSGKTSLLSKLCSESPDNVVSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQ 173          
The following BLAST results are available for this feature:
BLAST of CX288945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
SAR1_ASPTN6.132e-2037.40Small COPII coat GTPase sar1 OS=Aspergillus terreu... [more]
AR13B_DANRE8.008e-2035.34ADP-ribosylation factor-like protein 13B OS=Danio ... [more]
AR13B_HUMAN1.046e-1933.99ADP-ribosylation factor-like protein 13B OS=Homo s... [more]
SAR1_ASHGO1.366e-1938.46Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN... [more]
SAR1A_DICDI1.366e-1937.69GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]
SAR1_KLULA1.784e-1940.00Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
ARL15_BOVIN2.330e-1934.84ADP-ribosylation factor-like protein 15 OS=Bos tau... [more]
SAR1_PICPG3.043e-1937.69Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]
ARL15_PONAB3.043e-1936.55ADP-ribosylation factor-like protein 15 OS=Pongo a... [more]
ARL15_HUMAN3.043e-1936.55ADP-ribosylation factor-like protein 15 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionC02007C02SK IF1 Citrus clementina cDNA clone C02007C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288945 ID=CX288945; Name=CX288945; organism=Citrus clementina; type=EST; length=553bp
TTAAGCAGCCTCCTCCTTCAGATCTCGTGAGATAACAGAAAATGGGGCTG
TCATTTACGAAACTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAAT
TCTGATGGTGGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAGC
TCAAGCTCGGTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGTG
GAGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGGG
TCAGGATAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAACACTCAAG
GACTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTGAAGCT
AGAGATGAACTGCACCGGATGCTGAATGAGGATGAGTTGAGGGATGCTGT
GCTGCTTGTTTTTGCCAACAAGCAAGATCTTCCAAATGCCATGAATGCTG
CAGAGATCACTGATAAGCTTGGTCTTCACTCACTTCGCCAACGCCACTGG
TACATCCAGAGCACATGTGCAACATCTGGGGAAGGACTCTATGAGGGTCT
GGA
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