CX288945

Overview
NameCX288945
Unique NameCX288945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig162 contig Ccv1_Contig162:1..553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.191e-19
Identity = 47/131 (35.88%), Postives = 75/131 (57.25%), Query Frame = 3
Query:   87 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 479
            K  ++L +GLD AGKTT+L+ LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +   E++ EL  +L  +EL     L+  NK D P+A++  ++  +LGL+
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHECFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDDVRHQLGLY 149          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.191e-19
Identity = 45/145 (31.03%), Postives = 86/145 (59.31%), Query Frame = 3
Query:   45 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 479
            G S    F  L+ KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ + +  +L+  NK D P A++   + +  GL+
Sbjct:   11 GFSSVLQFLGLY-KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLY 154          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.779e-19
Identity = 44/135 (32.59%), Postives = 80/135 (59.26%), Query Frame = 3
Query:   81 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 485
            A K+ +++ +GLD AGKTT+L+ LK   I   +PT+    E +    ISFT +D+GG  + R +W+ YF     ++F++D  D +R+ E+R EL  +L ++++    +L+  NK D P A++  ++  +L +  +
Sbjct:   18 ANKKGKLVFLGLDNAGKTTLLHMLKDDRIAQHVPTLHPTSEQMSLGGISFTTYDLGGHAQARRVWKDYFPAVDAVVFLIDVADAERMQESRVELESLLQDEQIASVPVLILGNKIDKPGALSEDQLKWQLNIQHM 152          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.779e-19
Identity = 45/145 (31.03%), Postives = 86/145 (59.31%), Query Frame = 3
Query:   45 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 479
            G S    F  L+ KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ + +  +L+  NK D P A++   + +  GL+
Sbjct:   11 GFSSVLQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLY 154          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.779e-19
Identity = 45/145 (31.03%), Postives = 86/145 (59.31%), Query Frame = 3
Query:   45 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 479
            G S    F  L+ KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ + +  +L+  NK D P A++   + +  GL+
Sbjct:   11 GFSSVLQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLY 154          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: ARL15_MOUSE (ADP-ribosylation factor-like protein 15 OS=Mus musculus GN=Arl15 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.779e-19
Identity = 52/145 (35.86%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   81 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS-NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQ 509
            A+ E  ++ +GL  +GKT++L +L        + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV+DS +  D +  AR+ELH  L   +L     L+ AN QD P A +  EI     L  L R + W +Q
Sbjct:   29 ARPEYDLVCIGLTGSGKTSLLSELCSESPENVVSTTGFSIKAVPFQNAVLNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQ 173          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: AR13B_MOUSE (ADP-ribosylation factor-like protein 13B OS=Mus musculus GN=Arl13b PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.779e-19
Identity = 45/137 (32.85%), Postives = 78/137 (56.93%), Query Frame = 3
Query:   87 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 497
            +++ ++MVGLD AGKT     ++        PT+GF+   +       T++D+GG  +IR +W++Y+  + G+IFVVDS+D +R+ E ++ +  +L    +    +LV ANKQD   A+  A++ + L L  L   H
Sbjct:   20 RKVTLVMVGLDNAGKTATAKGIQGEHPEDVAPTVGFSKIDLRQGKFQVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEH 156          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.854e-19
Identity = 45/145 (31.03%), Postives = 86/145 (59.31%), Query Frame = 3
Query:   45 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 479
            G S    F  L+ KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ + +  +L+  NK D P A++   + +  GL+
Sbjct:   11 GFSSVLQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHLQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLY 154          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.854e-19
Identity = 45/145 (31.03%), Postives = 86/145 (59.31%), Query Frame = 3
Query:   45 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 479
            G S    F  L+ KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ + +  +L+  NK D P A++   + +  GL+
Sbjct:   11 GFSSVLQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLY 154          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.854e-19
Identity = 45/145 (31.03%), Postives = 86/145 (59.31%), Query Frame = 3
Query:   45 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 479
            G S    F  L+ KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ + +  +L+  NK D P A++   + +  GL+
Sbjct:   11 GFSSVLQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLY 154          
The following BLAST results are available for this feature:
BLAST of CX288945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
SAR1_ASPNG5.191e-1935.88Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1B_MOUSE5.191e-1931.03GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]
SAR1_CAEEL6.779e-1932.59GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]
SAR1B_HUMAN6.779e-1931.03GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
SAR1B_CRIGR6.779e-1931.03GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]
ARL15_MOUSE6.779e-1935.86ADP-ribosylation factor-like protein 15 OS=Mus mus... [more]
AR13B_MOUSE6.779e-1932.85ADP-ribosylation factor-like protein 13B OS=Mus mu... [more]
SAR1B_RAT8.854e-1931.03GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]
SAR1B_PIG8.854e-1931.03GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]
SAR1B_BOVIN8.854e-1931.03GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]

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Properties
Property NameValue
Genbank descriptionC02007C02SK IF1 Citrus clementina cDNA clone C02007C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288945 ID=CX288945; Name=CX288945; organism=Citrus clementina; type=EST; length=553bp
TTAAGCAGCCTCCTCCTTCAGATCTCGTGAGATAACAGAAAATGGGGCTG
TCATTTACGAAACTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAAT
TCTGATGGTGGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAGC
TCAAGCTCGGTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGTG
GAGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGGG
TCAGGATAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAACACTCAAG
GACTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTGAAGCT
AGAGATGAACTGCACCGGATGCTGAATGAGGATGAGTTGAGGGATGCTGT
GCTGCTTGTTTTTGCCAACAAGCAAGATCTTCCAAATGCCATGAATGCTG
CAGAGATCACTGATAAGCTTGGTCTTCACTCACTTCGCCAACGCCACTGG
TACATCCAGAGCACATGTGCAACATCTGGGGAAGGACTCTATGAGGGTCT
GGA
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