CX288945

Overview
NameCX288945
Unique NameCX288945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: ARL2_BOVIN (ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 9.099e-40
Identity = 77/156 (49.36%), Postives = 108/156 (69.23%), Query Frame = 3
Query:   84 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 551
            ++E+R+LM+GLD AGKTTIL K    +I T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A+++  I + L L S+R  HW IQ   A +GE L  G+
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATLLIFANKQDLPGALSSNAIREALELDSIRSHHWCIQGCSAVTGENLLPGI 169          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: ARL14_HUMAN (ADP-ribosylation factor-like protein 14 OS=Homo sapiens GN=ARL14 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 9.099e-40
Identity = 75/156 (48.08%), Postives = 114/156 (73.08%), Query Frame = 3
Query:   87 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEG 548
            K+ ++L++GLD+AGK+T+LYKLKL + +TTIPTIGFNVE +E  +N S TVWDVGGQ+K+R +W  Y +NT GL++VVDS D+ R+ E++ +   +L  + +++  +++ ANKQD+P A+ A +IT    +  L   R+WY+Q  CA +GEGL +G
Sbjct:   12 KQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNFSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVPVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQG 167          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: ARL2_HUMAN (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4)

HSP 1 Score: 162.155 bits (409), Expect = 1.552e-39
Identity = 77/156 (49.36%), Postives = 108/156 (69.23%), Query Frame = 3
Query:   84 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 551
            ++E+R+LM+GLD AGKTTIL K    +I T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A+++  I + L L S+R  HW IQ   A +GE L  G+
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGI 169          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: ARL2_MOUSE (ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.647e-39
Identity = 76/156 (48.72%), Postives = 107/156 (68.59%), Query Frame = 3
Query:   84 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 551
            ++E+R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A++   I + L L S+R  HW IQ   A +GE L  G+
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 169          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: ARL4C_MOUSE (ADP-ribosylation factor-like protein 4C OS=Mus musculus GN=Arl4c PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.898e-39
Identity = 83/167 (49.70%), Postives = 112/167 (67.07%), Query Frame = 3
Query:   69 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGL 551
            S + A + + I+M+GLD+AGKTT+LY+LK  E V T+PTIGFN E ++  N     IS   WDVGGQ+K+RPLW+ Y + T G+I+VVDS D DR+ EA+ ELH++    E +   LLV ANKQDLP ++  AEI  +L LH L     +++Q  CA  GEGL EG+
Sbjct:    6 SNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGM 172          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: ARL4C_HUMAN (ADP-ribosylation factor-like protein 4C OS=Homo sapiens GN=ARL4C PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.898e-39
Identity = 83/167 (49.70%), Postives = 112/167 (67.07%), Query Frame = 3
Query:   69 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGL 551
            S + A + + I+M+GLD+AGKTT+LY+LK  E V T+PTIGFN E ++  N     IS   WDVGGQ+K+RPLW+ Y + T G+I+VVDS D DR+ EA+ ELH++    E +   LLV ANKQDLP ++  AEI  +L LH L     +++Q  CA  GEGL EG+
Sbjct:    6 SNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGM 172          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: ARL2_RAT (ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.703e-39
Identity = 75/156 (48.08%), Postives = 107/156 (68.59%), Query Frame = 3
Query:   84 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 551
            ++++R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A++   I + L L S+R  HW IQ   A +GE L  G+
Sbjct:   14 ERDVRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 169          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: ARL3_TAEGU (ADP-ribosylation factor-like protein 3 OS=Taeniopygia guttata GN=ARL3 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.314e-38
Identity = 78/155 (50.32%), Postives = 108/155 (69.68%), Query Frame = 3
Query:   87 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 551
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR+YF+NT  LI+V+DS DR R  E   EL  +L+E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A SGEG+ +G+
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALSGEGVQDGM 170          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: ARL3_DANRE (ADP-ribosylation factor-like protein 3 OS=Danio rerio GN=arl3 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.927e-38
Identity = 77/155 (49.68%), Postives = 107/155 (69.03%), Query Frame = 3
Query:   87 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 551
            +E+RIL++GLD  GKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR+YF+NT  LI+V+DS DR R  E   EL  +L+E++L    +LVFANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ +G+
Sbjct:   16 QEVRILLLGLDNGGKTTLLKQLASEDITHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLVFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 170          
BLAST of CX288945 vs. ExPASy Swiss-Prot
Match: ARL5C_MOUSE (ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.823e-38
Identity = 76/170 (44.71%), Postives = 114/170 (67.06%), Query Frame = 3
Query:   42 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 551
            MG    KL  R+F  +E ++++VGLD AGKTTILY+    E+V T  TIG NVE +  +   F +WD+GGQ+ +R  W  Y+ N + +I V+DS DR+R++  R+EL++ML  + L++A +L+FANKQD+ ++M  AEI+  L L +++   W+IQ  CA +GEGL  GL
Sbjct:    1 MGQLIAKLM-RIFGSQEHKVIIVGLDNAGKTTILYQFLTNEVVHTCSTIGSNVEEIVLRKTHFLMWDLGGQEALRSTWDTYYSNAEFVILVIDSTDRNRLLTTREELYKMLAHEALQNASVLIFANKQDVKDSMTTAEISQFLTLSAIKDHPWHIQGCCALTGEGLPAGL 169          
The following BLAST results are available for this feature:
BLAST of CX288945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL2_BOVIN9.099e-4049.36ADP-ribosylation factor-like protein 2 OS=Bos taur... [more]
ARL14_HUMAN9.099e-4048.08ADP-ribosylation factor-like protein 14 OS=Homo sa... [more]
ARL2_HUMAN1.552e-3949.36ADP-ribosylation factor-like protein 2 OS=Homo sap... [more]
ARL2_MOUSE2.647e-3948.72ADP-ribosylation factor-like protein 2 OS=Mus musc... [more]
ARL4C_MOUSE5.898e-3949.70ADP-ribosylation factor-like protein 4C OS=Mus mus... [more]
ARL4C_HUMAN5.898e-3949.70ADP-ribosylation factor-like protein 4C OS=Homo sa... [more]
ARL2_RAT7.703e-3948.08ADP-ribosylation factor-like protein 2 OS=Rattus n... [more]
ARL3_TAEGU1.314e-3850.32ADP-ribosylation factor-like protein 3 OS=Taeniopy... [more]
ARL3_DANRE2.927e-3849.68ADP-ribosylation factor-like protein 3 OS=Danio re... [more]
ARL5C_MOUSE3.823e-3844.71ADP-ribosylation factor-like protein 5C OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionC02007C02SK IF1 Citrus clementina cDNA clone C02007C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288945 ID=CX288945; Name=CX288945; organism=Citrus clementina; type=EST; length=553bp
TTAAGCAGCCTCCTCCTTCAGATCTCGTGAGATAACAGAAAATGGGGCTG
TCATTTACGAAACTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAAT
TCTGATGGTGGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAGC
TCAAGCTCGGTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGTG
GAGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGGG
TCAGGATAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAACACTCAAG
GACTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTGAAGCT
AGAGATGAACTGCACCGGATGCTGAATGAGGATGAGTTGAGGGATGCTGT
GCTGCTTGTTTTTGCCAACAAGCAAGATCTTCCAAATGCCATGAATGCTG
CAGAGATCACTGATAAGCTTGGTCTTCACTCACTTCGCCAACGCCACTGG
TACATCCAGAGCACATGTGCAACATCTGGGGAAGGACTCTATGAGGGTCT
GGA
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