CX288947

Overview
NameCX288947
Unique NameCX288947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length311
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7570 contig Ccv1_Contig7570:474..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.331e-19
Identity = 49/102 (48.04%), Postives = 63/102 (61.76%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            F+V+IPD + L+ AAPLLCAG+T +SPL +FGL +                    AKAMG  VTVIS+S KK  EA++HLGAD +LVS D   MQ A  ++D
Sbjct:  146 FIVRIPDNLPLDGAAPLLCAGITTYSPLRYFGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPKKEEEALKHLGADSFLVSRDQDQMQAAIGTMD 247          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.282e-18
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            FV++IPD + L+ AAPLLCAG+TV+SP+ + GL +                    AKAMG  VTVIS+S+KKR EA+  LGAD +LVS D   +++A  ++D
Sbjct:  144 FVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGGLGHVGVKFAKAMGTKVTVISTSEKKRDEAINRLGADAFLVSRDPKQIKDAMGTMD 245          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.205e-18
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            F+++IPD + L+ AAPLLCAGVTV+SP+ + GL +                    AKAMG  VTVIS+S++KR EA+  LGAD +LVS D   M++A  ++D
Sbjct:  144 FIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVVGLGGLGHVAVKFAKAMGTKVTVISTSERKRDEAVTRLGADAFLVSRDPKQMKDAMGTMD 245          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.400e-17
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            +V+++P G+ L+ AAPLLCAGVTV+SP+   GL                      AKA G  VTVIS+S  KR EA+EHLGAD++LVS DA  M  AA ++D
Sbjct:  221 YVLRVPAGLPLDSAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKFAKAFGMRVTVISTSPGKRQEALEHLGADEFLVSRDAGQMAAAAATMD 322          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.387e-17
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSL 308
            FV++ P+ + L+  APLLCAG+T +SPL + GL +                    AKA G HVTVIS+S+ K+ EA+E LGAD++LVSSD+  MQ A  +L
Sbjct:  125 FVLRWPENLPLDSGAPLLCAGITTYSPLRYHGLDKPGTKVGVVGLGGLGHVAVKMAKAFGAHVTVISTSESKKQEALEKLGADEFLVSSDSDQMQAATGTL 225          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.387e-17
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            +V+++P G+ L+ AAPLLCAGVTV+SP+   GL                      AKA G  VTVIS+S  KR EA+EHLGAD++LVS DA  M  AA ++D
Sbjct:  218 YVLRVPAGLPLDGAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKFAKAFGMRVTVISTSPGKRREALEHLGADEFLVSRDAGQMAAAAGTMD 319          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.946e-17
Identity = 47/102 (46.08%), Postives = 58/102 (56.86%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            F V+IPD MAL+  APLLCAGVTV+SPL HF L +                     KA G  VTVIS+S  K+ EA+  LGAD ++VS +   MQ A  +LD
Sbjct:  149 FAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDKPGLHIGVVGLGGLGHMAVKFGKAFGAKVTVISTSPNKKDEAVNRLGADSFVVSREPEQMQSAMGTLD 250          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.185e-16
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            F+++ P+   L+  APLLCAG+T +SPL +FGL +                    AKA G  VTVIS+S  K+ EAM+HLG D+++VS+D   MQ A  +LD
Sbjct:  148 FIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDKPGLRVGVNGLGGLGHVAVKFAKAFGTKVTVISTSLSKKEEAMQHLGVDEFVVSTDPQQMQAAVGTLD 249          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            +FVV+ P+ M L++ APLLCAG+TV+SP+ + GL                      AKA G  VTVISSS  KR EA+E LGAD ++VS +A  M  A  ++D
Sbjct:  140 RFVVRFPEAMPLDKGAPLLCAGITVYSPMKYHGLNVPSKHVGVLGLGGLGHVAVKFAKAFGMTVTVISSSPGKRQEALERLGADAFVVSKNADEMNAATGTMD 242          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGL-KQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            +FV+ IPDG+  +  APLLCAG+TV+SP+ ++G+ K+S                    KA G  VTVIS S +K  EA++ LGAD +LV++D+  M+EA  ++D
Sbjct:  141 RFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMD 244          
The following BLAST results are available for this feature:
BLAST of CX288947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
MTDH_FRAAN3.331e-1948.04Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
CADH8_ARATH6.282e-1845.10Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
CADH7_ARATH8.205e-1845.10Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
CAD8C_ORYSJ1.400e-1747.06Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
MTDH_PETCR2.387e-1744.55Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
CAD8B_ORYSJ2.387e-1747.06Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
MTDH_MESCR6.946e-1746.08Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
GEDH1_OCIBA1.185e-1642.16Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
CADH5_ORYSJ2.021e-1643.69Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH3_ARATH2.021e-1641.35Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC02007C04SK IF1 Citrus clementina cDNA clone C02007C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288947 ID=CX288947; Name=CX288947; organism=Citrus clementina; type=EST; length=311bp
AAAAGTTTGTGGTGAAAATACCAGATGGAATGGCACTGGAGCAGGCGGCA
CCGCTATTGTGTGCTGGTGTGACAGTGTTCAGTCCCCTGAGCCACTTTGG
ATTGAAGCAGAGCGGGCTGAGAGGAGGAATCTTGGGGCTCGGAGGAGTAG
GCCACATGGGGGTTTTGATAGCTAAGGCGATGGGACACCATGTTACTGTG
ATTAGCTCTTCTGATAAGAAAAGAGTGGAAGCTATGGAGCATCTTGGTGC
CGATCAGTACCTTGTCAGCTCCGACGCAACTGGTATGCAAGAAGCCGCTG
ACTCACTTGAT
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