CX288947

Overview
NameCX288947
Unique NameCX288947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length311
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            ++ VKIP  + L  AAPLLCAG++++SP+ +FGL                      AKA G  VTV+SS+  K  +A++ LGAD +LVS+D   M+ A  ++D
Sbjct:  148 RYAVKIPHTLPLVSAAPLLCAGISMYSPMKYFGLTGPDKHVGIVGLGGLGHIGVRFAKAFGTKVTVVSSTTGKSKDALDTLGADGFLVSTDEDQMKAAMGTMD 250          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.085e-13
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 3
Query:    3 KFVVKIPDG------MALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            ++VV+IP G        L++ APLLCAGVTV+ P+   GL +                     KA G  VTVIS+S  K  EA+E LGAD +L+S++A  M+ AA ++D
Sbjct:  142 RYVVRIPGGGGGASPAPLDRLAPLLCAGVTVYCPMRRLGLDRPGVHLGVAGLGGLGHLAVKFGKAFGVKVTVISTSPWKEAEAVERLGADAFLLSTNAEQMKAAAGTMD 250          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = 3
Query:    3 KFVVKIPDG--------MALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSL 308
            +FVV+ P          + L+  APLLCAGVTV++P+   GL ++                   A+A G  VTVIS+S  KR EA+E LGAD ++VS++A+ M+ A  ++
Sbjct:  158 RFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGLCEAGKHVGVVGLGGLGHVAVKFARAFGMRVTVISTSPVKRQEALERLGADGFIVSTNASEMKAAMGTM 267          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.020e-12
Identity = 38/102 (37.25%), Postives = 53/102 (51.96%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSL 308
            ++  KIP    L +AAPLLCAG+TV++P+    + Q                     KA G  VTV S+S+ KR EA+  LGAD +++SSD   M+    SL
Sbjct:  144 RYCFKIPADYPLSKAAPLLCAGITVYTPMIRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVFSTSESKREEAINLLGADNFVISSDENQMESLKSSL 245          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            ++  KIP    LE AAPLLCAG+TV++P+    + Q                     KA G  VTV S+S  K+ EA+  LGA+ +++SSD   M+    SLD
Sbjct:  145 RYCYKIPVDYPLESAAPLLCAGITVYAPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALNLLGAENFVISSDHDQMKALEKSLD 247          
The following BLAST results are available for this feature:
BLAST of CX288947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CADH6_ARATH1.226e-1338.83Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CADH9_ORYSJ6.085e-1339.45Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CADH7_ORYSJ1.770e-1237.27Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH4_ORYSJ3.020e-1237.25Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]
CADH1_ARATH1.499e-1136.89Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC02007C04SK IF1 Citrus clementina cDNA clone C02007C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288947 ID=CX288947; Name=CX288947; organism=Citrus clementina; type=EST; length=311bp
AAAAGTTTGTGGTGAAAATACCAGATGGAATGGCACTGGAGCAGGCGGCA
CCGCTATTGTGTGCTGGTGTGACAGTGTTCAGTCCCCTGAGCCACTTTGG
ATTGAAGCAGAGCGGGCTGAGAGGAGGAATCTTGGGGCTCGGAGGAGTAG
GCCACATGGGGGTTTTGATAGCTAAGGCGATGGGACACCATGTTACTGTG
ATTAGCTCTTCTGATAAGAAAAGAGTGGAAGCTATGGAGCATCTTGGTGC
CGATCAGTACCTTGTCAGCTCCGACGCAACTGGTATGCAAGAAGCCGCTG
ACTCACTTGAT
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