CX288956

Overview
NameCX288956
Unique NameCX288956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL2_BOVIN (ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.343e-24
Identity = 49/105 (46.67%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            ++E+R+LM+GLD AGKTTIL K    +I T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+V DS DR R+ + + EL  ++ ++ L  A
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGA 118          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL4D_MOUSE (ADP-ribosylation factor-like protein 4D OS=Mus musculus GN=Arl4d PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.284e-24
Identity = 49/98 (50.00%), Postives = 72/98 (73.47%), Query Frame = 2
Query:  125 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRM 403
            + ++++GLD+AGKT++LY+LK  E V ++PT GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FV DS + +R+ EA+ ELHR+
Sbjct:   22 LHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDSAEIERLEEAKVELHRI 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL4D_BOVIN (ADP-ribosylation factor-like protein 4D OS=Bos taurus GN=ARL4D PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.284e-24
Identity = 49/98 (50.00%), Postives = 72/98 (73.47%), Query Frame = 2
Query:  125 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRM 403
            + ++++GLD+AGKT++LY+LK  E V +IPT GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FV D+ + +R+ EA+ ELHR+
Sbjct:   21 LHVVVIGLDSAGKTSLLYRLKFKEFVQSIPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRI 118          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL2_HUMAN (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4)

HSP 1 Score: 108.997 bits (271), Expect = 8.284e-24
Identity = 49/105 (46.67%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            ++E+R+LM+GLD AGKTTIL K    +I T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+V DS DR R+ + + EL  ++ ++ L  A
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 118          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL2_MOUSE (ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.082e-23
Identity = 48/105 (45.71%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            ++E+R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+V DS DR R+ + + EL  ++ ++ L  A
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 118          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL2_RAT (ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.148e-23
Identity = 47/105 (44.76%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            ++++R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+V DS DR R+ + + EL  ++ ++ L  A
Sbjct:   14 ERDVRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 118          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL5C_MOUSE (ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.112e-23
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = 2
Query:   74 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            MG    KL  R+F  +E ++++VGLD AGKTTILY+    E+V T  TIG NVE +  +   F +WD+GGQ+ +R  W  Y+ N + +I V DS DR+R++  R+EL++M+  + L++A
Sbjct:    1 MGQLIAKLM-RIFGSQEHKVIIVGLDNAGKTTILYQFLTNEVVHTCSTIGSNVEEIVLRKTHFLMWDLGGQEALRSTWDTYYSNAEFVILVIDSTDRNRLLTTREELYKMLAHEALQNA 118          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL2_CAEEL (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis elegans GN=evl-20 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.196e-22
Identity = 51/117 (43.59%), Postives = 83/117 (70.94%), Query Frame = 2
Query:   86 FTKLFSRLFAK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            F K+  +  A+ +EMRIL++GLD AGKTT++ K  L E   TI PT+GF+++TV +K+    +WDVGGQ  +R  W++YF++T  LI+V DS+DR+R+++  +EL +++ ++ L  A
Sbjct:    3 FLKILRKQRAREREMRILILGLDNAGKTTLMKKF-LDEPTDTIEPTLGFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLLQCSEELKKLLGEERLAGA 118          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARF5_ARATH (Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.196e-22
Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            +KEMRILMVGLD +GKTTI+ K+   +     PT+GFN++T+ Y+  +  +WDVGGQ  IR  WR+YF+ T GL++V DS+D  R+ + + EL  ++ ++ L
Sbjct:   14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERL 115          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL2_CAEBR (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.562e-22
Identity = 51/117 (43.59%), Postives = 82/117 (70.09%), Query Frame = 2
Query:   86 FTKLFSRLFAK-KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            F K+  +  A+ +EMRIL++GLD AGKTT++ K  L E   TI PT+GF+++TV +K+    +WDVGGQ  +R  W++YF++T  LI+V DS+DR+R+ +  +EL +++ ++ L  A
Sbjct:    3 FLKILRKQRAREREMRILILGLDNAGKTTLMKKF-LDEPTDTIEPTLGFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLSGA 118          
The following BLAST results are available for this feature:
BLAST of CX288956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
ARL2_BOVIN6.343e-2446.67ADP-ribosylation factor-like protein 2 OS=Bos taur... [more]
ARL4D_MOUSE8.284e-2450.00ADP-ribosylation factor-like protein 4D OS=Mus mus... [more]
ARL4D_BOVIN8.284e-2450.00ADP-ribosylation factor-like protein 4D OS=Bos tau... [more]
ARL2_HUMAN8.284e-2446.67ADP-ribosylation factor-like protein 2 OS=Homo sap... [more]
ARL2_MOUSE1.082e-2345.71ADP-ribosylation factor-like protein 2 OS=Mus musc... [more]
ARL2_RAT3.148e-2344.76ADP-ribosylation factor-like protein 2 OS=Rattus n... [more]
ARL5C_MOUSE4.112e-2342.86ADP-ribosylation factor-like protein 5C OS=Mus mus... [more]
ARL2_CAEEL1.196e-2243.59ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARF5_ARATH1.196e-2246.08Probable ADP-ribosylation factor At2g18390 OS=Arab... [more]
ARL2_CAEBR1.562e-2243.59ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionC02007D01SK IF1 Citrus clementina cDNA clone C02007D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288956 ID=CX288956; Name=CX288956; organism=Citrus clementina; type=EST; length=432bp
GACAAAGCTCTTTCTCTTGACTTGACCATCAACGGCAAAATCTAAATCCA
TCACAAGTTAATTAACAACAGAGATGGGATTGACGTTCACGAAGCTGTTT
AGTCGGTTATTTGCGAAGAAGGAGATGCGAATTCTGATGGTGGGTCTCGA
CGCCGCCGGTAAGACCACTATTTTGTACAAGCTTAAGCTCGGTGAGATCG
TCACCACCATCCCTACAATCGGTTTTAATGTGGAGACGGTTGAATACAAG
AACATTAGCTTCACGGTTTGGGATGTCGGAGGTCAGGACAAGATCCGTCC
ATTGTGGAGGCACTATTTTCAGAACACTCAGGGCCTCATTTTTGTGGCGG
ATAGCAATGACAGGGATAGAGTAGTTGAGGCAAGGGATGAGTTGCACCGA
ATGGTGAATGACGATGAATTGAGGGATGCTGT
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