CX288956

Overview
NameCX288956
Unique NameCX288956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL11_HUMAN (ADP-ribosylation factor-like protein 11 OS=Homo sapiens GN=ARL11 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.937e-22
Identity = 48/103 (46.60%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            K E +++M+GLD+AGKTT+LYKLK  ++V T+PT+GFNVE ++   ++S T+WDVGGQ  +R  W+ Y + T  L++V DS D  R+ E+  EL  ++ND  +
Sbjct:   10 KAEAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPGHVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNM 112          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL3_HUMAN (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.754e-22
Identity = 48/101 (47.52%), Postives = 70/101 (69.31%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP W++YF+NT  LI+V DS DR R  E   EL  ++ +++L
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKL 116          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL2_DICDI (ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.013e-21
Identity = 45/105 (42.86%), Postives = 71/105 (67.62%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            +KE+RILM+GLD AGKTTIL K    +I T  PT+GFN++T+ YK     +WD+GGQ  +R  WR+Y++    +I+V DS+D  R+ + + EL +++ +++   A
Sbjct:   14 EKELRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIQTLMYKEYKLNIWDIGGQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGA 118          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL11_BOVIN (ADP-ribosylation factor-like protein 11 OS=Bos taurus GN=ARL11 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.848e-21
Identity = 46/100 (46.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVND 412
            + E +++M+GLD+AGKTT+LY+LK  ++V T+PT+GFNVE +E   ++S T+WDVGGQ ++R  W+ + + T  L++V DS D  R+ EA  EL  +++D
Sbjct:   10 RAEAQVVMMGLDSAGKTTLLYRLKGYQLVETLPTVGFNVEPLEEPGHVSLTLWDVGGQSQLRASWKDHLEGTDILVYVLDSTDEARLPEAVAELREVLDD 109          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.564e-21
Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELR 424
            +E+RIL++GLD AGKTTIL +L   ++    PT GFNV+TV    +I   VWD+GGQ  IRP W +Y++N   LIFV DSND+ R  E   EL  ++++++LR
Sbjct:   16 REIRILLLGLDNAGKTTILKQLSSEDVQHVTPTKGFNVKTVAAMGDIRLNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLR 118          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL11_RAT (ADP-ribosylation factor-like protein 11 OS=Rattus norvegicus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.564e-21
Identity = 46/99 (46.46%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  128 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            +++M+GLD AGKTTILYKLK   +V T+PT+GFNVE +E   ++S T+WD+GGQ ++R  W+ Y +    L++V DS D  R+ EA  EL  ++ D  +
Sbjct:   12 QVVMLGLDCAGKTTILYKLKGNRLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELEEVLEDPNM 110          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL5C_HUMAN (Putative ADP-ribosylation factor-like protein 5C OS=Homo sapiens GN=ARL5C PE=2 SV=4)

HSP 1 Score: 98.9821 bits (245), Expect = 8.573e-21
Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = 2
Query:   74 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            MG    KL S +F  +E  +++VGLD  GKTTILY+    E+V   PTIG NVE +      F +WD+   + +  +W  Y+ NT+ +I V DS DRDR++  R+EL++M+  + L+DA
Sbjct:    1 MGQLIAKLMS-IFGNQEHTVIIVGLDNEGKTTILYRFLTNEVVHMCPTIGSNVEEIILPKTHFFMWDIVRPEALSFIWNTYYSNTEFIILVIDSTDRDRLLTTREELYKMLAHEALQDA 118          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARD1_CAEEL (Putative GTP-binding protein ard-1 homolog OS=Caenorhabditis elegans GN=arc-1 PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 8.573e-21
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:  122 EMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVND 412
            E R++++GLD AGKT+I+ +LK  ++ T +   PTIGFN+ET+ YKN     WDVGG  K+R LW+HY+ N Q + +V D    +R  EA  EL+R+++D
Sbjct:  369 ESRVVLLGLDGAGKTSIVRRLKKVQMDTVMAPHPTIGFNIETIHYKNYRLNFWDVGGLPKLRHLWKHYYSNAQAIFYVIDGYAVERFSEAIKELNRVMSD 468          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL6_PONAB (ADP-ribosylation factor-like protein 6 OS=Pongo abelii GN=ARL6 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.120e-20
Identity = 47/105 (44.76%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELR 424
            KKE+ +L +GLD +GKTTI+ KLK     +   +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV DS+DR R+V A++EL  ++N  +++
Sbjct:   15 KKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIK 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL6_HUMAN (ADP-ribosylation factor-like protein 6 OS=Homo sapiens GN=ARL6 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.120e-20
Identity = 47/105 (44.76%), Postives = 74/105 (70.48%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELR 424
            KKE+ +L +GLD +GKTTI+ KLK     +   +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV DS+DR R+V A++EL  ++N  +++
Sbjct:   15 KKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIK 119          
The following BLAST results are available for this feature:
BLAST of CX288956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
ARL11_HUMAN5.937e-2246.60ADP-ribosylation factor-like protein 11 OS=Homo sa... [more]
ARL3_HUMAN7.754e-2247.52ADP-ribosylation factor-like protein 3 OS=Homo sap... [more]
ARL2_DICDI1.013e-2142.86ADP-ribosylation factor-like protein 2 OS=Dictyost... [more]
ARL11_BOVIN3.848e-2146.00ADP-ribosylation factor-like protein 11 OS=Bos tau... [more]
ARL3_CAEEL6.564e-2148.54ADP-ribosylation factor-like protein 3 OS=Caenorha... [more]
ARL11_RAT6.564e-2146.46ADP-ribosylation factor-like protein 11 OS=Rattus ... [more]
ARL5C_HUMAN8.573e-2141.18Putative ADP-ribosylation factor-like protein 5C O... [more]
ARD1_CAEEL8.573e-2146.00Putative GTP-binding protein ard-1 homolog OS=Caen... [more]
ARL6_PONAB1.120e-2044.76ADP-ribosylation factor-like protein 6 OS=Pongo ab... [more]
ARL6_HUMAN1.120e-2044.76ADP-ribosylation factor-like protein 6 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionC02007D01SK IF1 Citrus clementina cDNA clone C02007D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288956 ID=CX288956; Name=CX288956; organism=Citrus clementina; type=EST; length=432bp
GACAAAGCTCTTTCTCTTGACTTGACCATCAACGGCAAAATCTAAATCCA
TCACAAGTTAATTAACAACAGAGATGGGATTGACGTTCACGAAGCTGTTT
AGTCGGTTATTTGCGAAGAAGGAGATGCGAATTCTGATGGTGGGTCTCGA
CGCCGCCGGTAAGACCACTATTTTGTACAAGCTTAAGCTCGGTGAGATCG
TCACCACCATCCCTACAATCGGTTTTAATGTGGAGACGGTTGAATACAAG
AACATTAGCTTCACGGTTTGGGATGTCGGAGGTCAGGACAAGATCCGTCC
ATTGTGGAGGCACTATTTTCAGAACACTCAGGGCCTCATTTTTGTGGCGG
ATAGCAATGACAGGGATAGAGTAGTTGAGGCAAGGGATGAGTTGCACCGA
ATGGTGAATGACGATGAATTGAGGGATGCTGT
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