CX288956

Overview
NameCX288956
Unique NameCX288956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL8B_MACFA (ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.201e-18
Identity = 38/110 (34.55%), Postives = 69/110 (62.73%), Query Frame = 2
Query:   98 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELR 424
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    ++++ D+ DR+++  +R+ELH +++  +L+
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRYRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL8B_BOVIN (ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.159e-17
Identity = 37/110 (33.64%), Postives = 69/110 (62.73%), Query Frame = 2
Query:   98 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELR 424
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + + +W  Y +    ++++ D+ DR+++  +R+ELH +++  +L+
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL8A_XENTR (ADP-ribosylation factor-like protein 8A OS=Xenopus tropicalis GN=arl8a PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.159e-17
Identity = 39/117 (33.33%), Postives = 72/117 (61.54%), Query Frame = 2
Query:   86 FTKL---FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELR 424
            F KL   F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  +   N++  +WD+GGQ + R +W  Y +    ++++ D+ D+D++  +++ELH +++  +L+
Sbjct:    5 FNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQDKIEASKNELHNLLDKAQLQ 121          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL8_DROME (ADP-ribosylation factor-like protein 8 OS=Drosophila melanogaster GN=Gie PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.513e-17
Identity = 37/109 (33.94%), Postives = 67/109 (61.47%), Query Frame = 2
Query:   98 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            F  +F K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  +   N++  VWD+GGQ + R +W  Y +    ++++ D+ D D++  +R+ELH +++  +L
Sbjct:   12 FKSIFWKEEMELTLVGLQFSGKTTFVNVIASGQFAEDMIPTVGFNMRKITRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLLDKPQL 120          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL8A_MOUSE (ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.581e-17
Identity = 38/117 (32.48%), Postives = 72/117 (61.54%), Query Frame = 2
Query:   86 FTKL---FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELR 424
            F KL   F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  +   N++  +WD+GGQ + R +W  Y +    ++++ D+ D++++  +++ELH +++  +L+
Sbjct:    5 FNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 121          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL8A_HUMAN (ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.581e-17
Identity = 38/117 (32.48%), Postives = 72/117 (61.54%), Query Frame = 2
Query:   86 FTKL---FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELR 424
            F KL   F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  +   N++  +WD+GGQ + R +W  Y +    ++++ D+ D++++  +++ELH +++  +L+
Sbjct:    5 FNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 121          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL8A_CHICK (ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.371e-17
Identity = 38/117 (32.48%), Postives = 72/117 (61.54%), Query Frame = 2
Query:   86 FTKL---FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELR 424
            F KL   F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  +   N++  +WD+GGQ + R +W  Y +    ++++ D+ D++++  +++ELH +++  +L+
Sbjct:    5 FNKLLDWFRALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 121          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  113 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            A K  +IL +GLD AGKTT+L+ LK   + T  PT+    E +    + FT +D+GG  + R LW+ YF    G++F+ D+ D +R  EAR EL  +++ +EL
Sbjct:   17 AHKNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEEL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL8B_PONAB (ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 37/110 (33.64%), Postives = 68/110 (61.82%), Query Frame = 2
Query:   98 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELR 424
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    ++++ D+  R+++  +R+ELH +++  +L+
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAAYREKIEASRNELHNLLDKPQLQ 121          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.510e-17
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRD 427
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   NI FT +D+GG  + R LW+ YF    G++F+ DS D DR  EAR EL  + N  EL+D
Sbjct:   21 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHVQARRLWKDYFPEVNGIVFLVDSADPDRFDEARVELDALFNITELKD 123          
The following BLAST results are available for this feature:
BLAST of CX288956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
ARL8B_MACFA5.201e-1834.55ADP-ribosylation factor-like protein 8B OS=Macaca ... [more]
ARL8B_BOVIN1.159e-1733.64ADP-ribosylation factor-like protein 8B OS=Bos tau... [more]
ARL8A_XENTR1.159e-1733.33ADP-ribosylation factor-like protein 8A OS=Xenopus... [more]
ARL8_DROME1.513e-1733.94ADP-ribosylation factor-like protein 8 OS=Drosophi... [more]
ARL8A_MOUSE2.581e-1732.48ADP-ribosylation factor-like protein 8A OS=Mus mus... [more]
ARL8A_HUMAN2.581e-1732.48ADP-ribosylation factor-like protein 8A OS=Homo sa... [more]
ARL8A_CHICK3.371e-1732.48ADP-ribosylation factor-like protein 8A OS=Gallus ... [more]
SAR1_USTMA4.403e-1739.81Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
ARL8B_PONAB4.403e-1733.64ADP-ribosylation factor-like protein 8B OS=Pongo a... [more]
SAR1_CANGA7.510e-1743.69Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]

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Properties
Property NameValue
Genbank descriptionC02007D01SK IF1 Citrus clementina cDNA clone C02007D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288956 ID=CX288956; Name=CX288956; organism=Citrus clementina; type=EST; length=432bp
GACAAAGCTCTTTCTCTTGACTTGACCATCAACGGCAAAATCTAAATCCA
TCACAAGTTAATTAACAACAGAGATGGGATTGACGTTCACGAAGCTGTTT
AGTCGGTTATTTGCGAAGAAGGAGATGCGAATTCTGATGGTGGGTCTCGA
CGCCGCCGGTAAGACCACTATTTTGTACAAGCTTAAGCTCGGTGAGATCG
TCACCACCATCCCTACAATCGGTTTTAATGTGGAGACGGTTGAATACAAG
AACATTAGCTTCACGGTTTGGGATGTCGGAGGTCAGGACAAGATCCGTCC
ATTGTGGAGGCACTATTTTCAGAACACTCAGGGCCTCATTTTTGTGGCGG
ATAGCAATGACAGGGATAGAGTAGTTGAGGCAAGGGATGAGTTGCACCGA
ATGGTGAATGACGATGAATTGAGGGATGCTGT
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