CX288956

Overview
NameCX288956
Unique NameCX288956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL6_CAEBR (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis briggsae GN=arl-6 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.809e-17
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 2
Query:   86 FTKLFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDEL 394
            F    S LF   KK++ I++VGLD +GKTTIL +LK  E  +   +PT+G  V     +N+SF  +D+ GQ K R  W  YF ++QG+IFV DS+DR R+   +DEL
Sbjct:    3 FLSSLSNLFGMGKKDVNIVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRVRMELLKDEL 109          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL6_CAEEL (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis elegans GN=arl-6 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.185e-16
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 2
Query:   86 FTKLFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDEL 394
            F    S LF   KK++ I++VGLD +GKTTIL +LK  E  +   +PT+G  V     +N+SF  +D+ GQ K R  W  YF ++QG+IFV DS+DR R+   +DEL
Sbjct:    3 FFSSLSSLFGLGKKDVNIVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRLRMELLKDEL 109          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.854e-16
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+ D+ D DR  EA+ EL  +++ +EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEEL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.868e-16
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRD 427
            K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LWR YF    G++F+ D+ D +R+ E++ EL  ++  +EL++
Sbjct:   15 KHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAELDALLAMEELKN 117          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_YEAST (Small COPII coat GTPase SAR1 OS=Saccharomyces cerevisiae GN=SAR1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.358e-16
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRD 427
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   NI FT +D+GG  + R LW+ YF    G++F+ D+ D +R  EAR EL  + N  EL+D
Sbjct:   22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKD 124          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.358e-16
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            K  ++L +GLD AGKTT+L+ LK   + T  PT+    E +   N+ FT +D+GG  + R LWR YF    G++F+ DS D +R  E++ EL  +++ + L
Sbjct:   19 KSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.304e-16
Identity = 37/101 (36.63%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+ D+ D +R+ EA+ E+  +++ +EL
Sbjct:   19 KHGKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALLSMEEL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 8.304e-16
Identity = 38/101 (37.62%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+ D+ D +R  EA+ EL  +++ +EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSIGNVRFTTFDLGGHQQARRLWKDYFPEVNGVVFLVDAKDHERFPEAKAELDALLSMEEL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL3_PONAB (ADP-ribosylation factor-like protein 3 OS=Pongo abelii GN=ARL3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.304e-16
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 328
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP W++YF+NT
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENT 85          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.084e-15
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            K  +IL +GLD AGKTT+L  LK G + + +PT     E +   NI F  +D+GG +  R LW+ Y+ +   ++++ DS+ +DR VE++ EL  +++ DEL
Sbjct:   19 KNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELAMGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDEL 119          
The following BLAST results are available for this feature:
BLAST of CX288956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
ARL6_CAEBR9.809e-1744.86ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
ARL6_CAEEL2.185e-1644.86ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
SAR1_MAGGR2.854e-1638.61Small COPII coat GTPase SAR1 OS=Magnaporthe grisea... [more]
SAR1_PHANO4.868e-1636.89Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
SAR1_YEAST6.358e-1641.75Small COPII coat GTPase SAR1 OS=Saccharomyces cere... [more]
SAR1_CRYNE6.358e-1638.61Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_NEUCR8.304e-1636.63Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1_CHAGB8.304e-1637.62Small COPII coat GTPase SAR1 OS=Chaetomium globosu... [more]
ARL3_PONAB8.304e-1651.43ADP-ribosylation factor-like protein 3 OS=Pongo ab... [more]
SAR1A_DICDI1.084e-1538.61GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC02007D01SK IF1 Citrus clementina cDNA clone C02007D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288956 ID=CX288956; Name=CX288956; organism=Citrus clementina; type=EST; length=432bp
GACAAAGCTCTTTCTCTTGACTTGACCATCAACGGCAAAATCTAAATCCA
TCACAAGTTAATTAACAACAGAGATGGGATTGACGTTCACGAAGCTGTTT
AGTCGGTTATTTGCGAAGAAGGAGATGCGAATTCTGATGGTGGGTCTCGA
CGCCGCCGGTAAGACCACTATTTTGTACAAGCTTAAGCTCGGTGAGATCG
TCACCACCATCCCTACAATCGGTTTTAATGTGGAGACGGTTGAATACAAG
AACATTAGCTTCACGGTTTGGGATGTCGGAGGTCAGGACAAGATCCGTCC
ATTGTGGAGGCACTATTTTCAGAACACTCAGGGCCTCATTTTTGTGGCGG
ATAGCAATGACAGGGATAGAGTAGTTGAGGCAAGGGATGAGTTGCACCGA
ATGGTGAATGACGATGAATTGAGGGATGCTGT
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