CX288956

Overview
NameCX288956
Unique NameCX288956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARFRP_PONAB (ADP-ribosylation factor-related protein 1 OS=Pongo abelii GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.121e-15
Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = 2
Query:   95 LFSRLFAKKEMRILMVGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            L+  +F K E  IL++GLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V DS D +R+ E++    ++V  + L
Sbjct:    8 LYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEAL 124          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARFRP_HUMAN (ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.121e-15
Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = 2
Query:   95 LFSRLFAKKEMRILMVGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            L+  +F K E  IL++GLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V DS D +R+ E++    ++V  + L
Sbjct:    8 LYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEAL 124          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.382e-15
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            K  ++L +GLD AGKTT+L+ LK   + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+ D+ D +R  E++ EL  +   +EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEEL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.382e-15
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            K  ++L +GLD AGKTT+L+ LK   + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+ D+ D +R  E++ EL  +   +EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEEL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.181e-15
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+ D+ D +R  E++ EL  ++  +EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEEL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.181e-15
Identity = 37/103 (35.92%), Postives = 63/103 (61.17%), Query Frame = 2
Query:  113 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            A K+ +++ +GLD AGKTT+L+ LK   I   +PT+    E +    ISFT +D+GG  + R +W+ YF     ++F+ D  D +R+ E+R EL  ++ D+++
Sbjct:   18 ANKKGKLVFLGLDNAGKTTLLHMLKDDRIAQHVPTLHPTSEQMSLGGISFTTYDLGGHAQARRVWKDYFPAVDAVVFLIDVADAERMQESRVELESLLQDEQI 120          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.181e-15
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+ D+ D +R  E++ EL  ++  +EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEEL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.181e-15
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+ D+ D +R  E++ EL  ++  +EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEEL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.045e-14
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   N+ FT +D+GG ++ R +W+ YF    G++++ D  D +R  E+R EL  ++  +EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELSIGNVRFTTFDLGGHEQARRVWKDYFPEVDGIVYLVDIADPERFEESRVELDALLKIEEL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_SCHPO (Small COPII coat GTPase sar1 OS=Schizosaccharomyces pombe GN=sar1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.671e-14
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LWR YF    G++++ D  D +R+ E++ EL  ++  +EL
Sbjct:   19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEEL 119          
The following BLAST results are available for this feature:
BLAST of CX288956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
ARFRP_PONAB4.121e-1535.83ADP-ribosylation factor-related protein 1 OS=Pongo... [more]
ARFRP_HUMAN4.121e-1535.83ADP-ribosylation factor-related protein 1 OS=Homo ... [more]
SAR1_PICST5.382e-1536.63Small COPII coat GTPase SAR1 OS=Pichia stipitis GN... [more]
SAR1_DEBHA5.382e-1536.63Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]
SAR1_NEOFI9.181e-1537.62Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]
SAR1_CAEEL9.181e-1535.92GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]
SAR1_ASPFU9.181e-1537.62Small COPII coat GTPase sar1 OS=Aspergillus fumiga... [more]
SAR1_ASPCL9.181e-1537.62Small COPII coat GTPase sar1 OS=Aspergillus clavat... [more]
SAR1_PICPG2.045e-1436.63Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]
SAR1_SCHPO2.671e-1436.63Small COPII coat GTPase sar1 OS=Schizosaccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionC02007D01SK IF1 Citrus clementina cDNA clone C02007D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288956 ID=CX288956; Name=CX288956; organism=Citrus clementina; type=EST; length=432bp
GACAAAGCTCTTTCTCTTGACTTGACCATCAACGGCAAAATCTAAATCCA
TCACAAGTTAATTAACAACAGAGATGGGATTGACGTTCACGAAGCTGTTT
AGTCGGTTATTTGCGAAGAAGGAGATGCGAATTCTGATGGTGGGTCTCGA
CGCCGCCGGTAAGACCACTATTTTGTACAAGCTTAAGCTCGGTGAGATCG
TCACCACCATCCCTACAATCGGTTTTAATGTGGAGACGGTTGAATACAAG
AACATTAGCTTCACGGTTTGGGATGTCGGAGGTCAGGACAAGATCCGTCC
ATTGTGGAGGCACTATTTTCAGAACACTCAGGGCCTCATTTTTGTGGCGG
ATAGCAATGACAGGGATAGAGTAGTTGAGGCAAGGGATGAGTTGCACCGA
ATGGTGAATGACGATGAATTGAGGGATGCTGT
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