CX288956

Overview
NameCX288956
Unique NameCX288956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL15_HUMAN (ADP-ribosylation factor-like protein 15 OS=Homo sapiens GN=ARL15 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.731e-13
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  113 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADS-NDRDRVVEARDELHRMVNDDEL 421
            A+ E  ++ +GL  +GKT++L KL        + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV DS +  D +  AR+ELH  +   +L
Sbjct:   29 ARPEYDLVCIGLTGSGKTSLLSKLCSESPDNVVSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQL 132          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.261e-13
Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++ D+ D++R  E++ EL  +++DD L
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDAL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.953e-13
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++ D+ D++R  E++ EL  +++D+ L
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.953e-13
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++ D+ D++R  E++ EL  +++D+ L
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.857e-13
Identity = 36/101 (35.64%), Postives = 57/101 (56.44%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            K  ++L +GLD AGKTT+L+ LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+ D+ D +   E++ EL  ++  +EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHECFPESKAELDALLAMEEL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL15_MOUSE (ADP-ribosylation factor-like protein 15 OS=Mus musculus GN=Arl15 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.857e-13
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  113 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADS-NDRDRVVEARDELHRMVNDDEL 421
            A+ E  ++ +GL  +GKT++L +L        + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV DS +  D +  AR+ELH  +   +L
Sbjct:   29 ARPEYDLVCIGLTGSGKTSLLSELCSESPENVVSTTGFSIKAVPFQNAVLNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQL 132          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.038e-13
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++ D+ D++R  E++ EL  +++D+ L
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEAL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: AR13B_DANRE (ADP-ribosylation factor-like protein 13B OS=Danio rerio GN=arl13b PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.593e-13
Identity = 31/92 (33.70%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDEL 394
            +++ ++MVGLD AGKT  +  ++    +   PT+GF+   ++      T++D+GG  +IR +W++Y+  + G++FV DS+D  R+ E RD +
Sbjct:   20 RKVTLVMVGLDNAGKTATVRGIQGESPLDVAPTVGFSKVDLKQGKFEVTIFDLGGGKRIRGIWKNYYSESYGVVFVVDSSDVQRIQETRDTM 111          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.122e-12
Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDEL 421
            KK+  I+ VGLD AGK+T+L  LK     T  PT     + +   +I F  +D+GG +  R LW  Y  N+ G++F+ DS D  R  E+R  L  ++++ +L
Sbjct:   18 KKKATIVFVGLDNAGKSTLLAMLKNSATTTVAPTQQPTSQELVMGSIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHDL 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.466e-12
Identity = 44/129 (34.11%), Postives = 73/129 (56.59%), Query Frame = 2
Query:   80 LTFTK-LFSRLFAKKEMRILMVGLDAAGKTTILYKLK--LGEIVTT---------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRD 427
            ++F K LF  L  KK   ++++G++  GKTT+LY +     E +TT         IPT GFNVE++  + + F +WD+GG++  R  +RHY       +IFV DS+D + + E++ E   + N   L++
Sbjct:    5 ISFIKNLFGFLTIKK---VMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKN 130          
The following BLAST results are available for this feature:
BLAST of CX288956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
ARL15_HUMAN1.731e-1336.54ADP-ribosylation factor-like protein 15 OS=Homo sa... [more]
SAR1B_BRACM2.261e-1335.29GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR1A_BRACM2.953e-1334.31GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1A_ARATH2.953e-1334.31GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1_ASPNG3.857e-1335.64Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
ARL15_MOUSE3.857e-1335.58ADP-ribosylation factor-like protein 15 OS=Mus mus... [more]
SAR1B_ARATH5.038e-1334.31GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
AR13B_DANRE8.593e-1333.70ADP-ribosylation factor-like protein 13B OS=Danio ... [more]
SAR1_GIALA1.122e-1236.27GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
ARLX_DICDI1.466e-1234.11ADP-ribosylation factor-like protein DDB_G0292332 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02007D01SK IF1 Citrus clementina cDNA clone C02007D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288956 ID=CX288956; Name=CX288956; organism=Citrus clementina; type=EST; length=432bp
GACAAAGCTCTTTCTCTTGACTTGACCATCAACGGCAAAATCTAAATCCA
TCACAAGTTAATTAACAACAGAGATGGGATTGACGTTCACGAAGCTGTTT
AGTCGGTTATTTGCGAAGAAGGAGATGCGAATTCTGATGGTGGGTCTCGA
CGCCGCCGGTAAGACCACTATTTTGTACAAGCTTAAGCTCGGTGAGATCG
TCACCACCATCCCTACAATCGGTTTTAATGTGGAGACGGTTGAATACAAG
AACATTAGCTTCACGGTTTGGGATGTCGGAGGTCAGGACAAGATCCGTCC
ATTGTGGAGGCACTATTTTCAGAACACTCAGGGCCTCATTTTTGTGGCGG
ATAGCAATGACAGGGATAGAGTAGTTGAGGCAAGGGATGAGTTGCACCGA
ATGGTGAATGACGATGAATTGAGGGATGCTGT
back to top