CX288956

Overview
NameCX288956
Unique NameCX288956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: AR13B_HUMAN (ADP-ribosylation factor-like protein 13B OS=Homo sapiens GN=ARL13B PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 32/96 (33.33%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMV 406
            +++ +LMVGLD AGKT     ++        PT+GF+   +       T++D+GG  +IR +W++Y+  + G+IFV DS+D +R+ E ++ +  M+
Sbjct:   20 RKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINLRQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEML 115          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.570e-12
Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = 2
Query:  116 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVN 409
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++ DS D++R  E++ EL  +++
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLS 115          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: AR13B_MOUSE (ADP-ribosylation factor-like protein 13B OS=Mus musculus GN=Arl13b PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.241e-11
Identity = 30/96 (31.25%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMV 406
            +++ ++MVGLD AGKT     ++        PT+GF+   +       T++D+GG  +IR +W++Y+  + G+IFV DS+D +R+ E ++ +  ++
Sbjct:   20 RKVTLVMVGLDNAGKTATAKGIQGEHPEDVAPTVGFSKIDLRQGKFQVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVL 115          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARL10_HUMAN (ADP-ribosylation factor-like protein 10 OS=Homo sapiens GN=ARL10 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.043e-11
Identity = 35/100 (35.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  119 KEMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDD 415
            ++  +L++GLD AGK+T L  L     +   IPT GFN   +  K+    + ++GG   +R  W+ +      L+FV DS DR R+  AR ELH++++ D
Sbjct:   76 EQREVLVLGLDGAGKSTFLRVLSGKPPLEGHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWARQELHKLLDKD 175          
The following BLAST results are available for this feature:
BLAST of CX288956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
AR13B_HUMAN4.265e-1233.33ADP-ribosylation factor-like protein 13B OS=Homo s... [more]
SAR1_TOBAC5.570e-1234.69GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
AR13B_MOUSE1.241e-1131.25ADP-ribosylation factor-like protein 13B OS=Mus mu... [more]
ARL10_HUMAN8.043e-1135.00ADP-ribosylation factor-like protein 10 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionC02007D01SK IF1 Citrus clementina cDNA clone C02007D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288956 ID=CX288956; Name=CX288956; organism=Citrus clementina; type=EST; length=432bp
GACAAAGCTCTTTCTCTTGACTTGACCATCAACGGCAAAATCTAAATCCA
TCACAAGTTAATTAACAACAGAGATGGGATTGACGTTCACGAAGCTGTTT
AGTCGGTTATTTGCGAAGAAGGAGATGCGAATTCTGATGGTGGGTCTCGA
CGCCGCCGGTAAGACCACTATTTTGTACAAGCTTAAGCTCGGTGAGATCG
TCACCACCATCCCTACAATCGGTTTTAATGTGGAGACGGTTGAATACAAG
AACATTAGCTTCACGGTTTGGGATGTCGGAGGTCAGGACAAGATCCGTCC
ATTGTGGAGGCACTATTTTCAGAACACTCAGGGCCTCATTTTTGTGGCGG
ATAGCAATGACAGGGATAGAGTAGTTGAGGCAAGGGATGAGTTGCACCGA
ATGGTGAATGACGATGAATTGAGGGATGCTGT
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