CX288956

Overview
NameCX288956
Unique NameCX288956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 9.391e-52
Identity = 93/119 (78.15%), Postives = 111/119 (93.28%), Query Frame = 2
Query:   74 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            MGL  ++LF+RLF KK++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++NISFTVWDVGGQDKIRPLWRHY+ NT GLIFV DSNDR+R+ +AR+ LHRM+N++EL+DA
Sbjct:    1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDA 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 6.730e-50
Identity = 91/119 (76.47%), Postives = 107/119 (89.92%), Query Frame = 2
Query:   74 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            MGL  +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFV DSNDR R+ EAR+ + RM+N+DELR+A
Sbjct:    1 MGLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNA 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 8.790e-50
Identity = 91/119 (76.47%), Postives = 107/119 (89.92%), Query Frame = 2
Query:   74 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            MGL  +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFV DSNDR R+ EAR+ + RM+N+DELR+A
Sbjct:    1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNA 119          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 3.126e-47
Identity = 87/113 (76.99%), Postives = 98/113 (86.73%), Query Frame = 2
Query:   92 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            K+FS++F  KEMRILM GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFV D  DRDR+ EAR ELHR++ND E+RDA
Sbjct:    3 KMFSKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDA 115          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 4.083e-47
Identity = 87/113 (76.99%), Postives = 98/113 (86.73%), Query Frame = 2
Query:   92 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            KL S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFV D  DRDR+ EAR ELHR++ND E+RDA
Sbjct:    3 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDA 115          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 6.965e-47
Identity = 86/113 (76.11%), Postives = 98/113 (86.73%), Query Frame = 2
Query:   92 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFV D  DRDR+ EAR ELHR++ND E+RDA
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA 115          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 6.965e-47
Identity = 86/113 (76.11%), Postives = 98/113 (86.73%), Query Frame = 2
Query:   92 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFV D  DRDR+ EAR ELHR++ND E+RDA
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA 115          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 6.965e-47
Identity = 86/113 (76.11%), Postives = 98/113 (86.73%), Query Frame = 2
Query:   92 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFV D  DRDR+ EAR ELHR++ND E+RDA
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA 115          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 6.965e-47
Identity = 86/113 (76.11%), Postives = 98/113 (86.73%), Query Frame = 2
Query:   92 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFV D  DRDR+ EAR ELHR++ND E+RDA
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA 115          
BLAST of CX288956 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 6.965e-47
Identity = 86/113 (76.11%), Postives = 98/113 (86.73%), Query Frame = 2
Query:   92 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVADSNDRDRVVEARDELHRMVNDDELRDA 430
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFV D  DRDR+ EAR ELHR++ND E+RDA
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA 115          
The following BLAST results are available for this feature:
BLAST of CX288956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
ARF1_PLAFO9.391e-5278.15ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF1_YEAST6.730e-5076.47ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF2_YEAST8.790e-5076.47ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF6_XENLA3.126e-4776.99ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF3_DROME4.083e-4776.99ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF6_RAT6.965e-4776.11ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG6.965e-4776.11ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE6.965e-4776.11ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN6.965e-4776.11ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK6.965e-4776.11ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]

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Properties
Property NameValue
Genbank descriptionC02007D01SK IF1 Citrus clementina cDNA clone C02007D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288956 ID=CX288956; Name=CX288956; organism=Citrus clementina; type=EST; length=432bp
GACAAAGCTCTTTCTCTTGACTTGACCATCAACGGCAAAATCTAAATCCA
TCACAAGTTAATTAACAACAGAGATGGGATTGACGTTCACGAAGCTGTTT
AGTCGGTTATTTGCGAAGAAGGAGATGCGAATTCTGATGGTGGGTCTCGA
CGCCGCCGGTAAGACCACTATTTTGTACAAGCTTAAGCTCGGTGAGATCG
TCACCACCATCCCTACAATCGGTTTTAATGTGGAGACGGTTGAATACAAG
AACATTAGCTTCACGGTTTGGGATGTCGGAGGTCAGGACAAGATCCGTCC
ATTGTGGAGGCACTATTTTCAGAACACTCAGGGCCTCATTTTTGTGGCGG
ATAGCAATGACAGGGATAGAGTAGTTGAGGCAAGGGATGAGTTGCACCGA
ATGGTGAATGACGATGAATTGAGGGATGCTGT
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