CX288960

Overview
NameCX288960
Unique NameCX288960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: PAM74_ARATH (Probable LRR receptor-like serine/threonine-protein kinase PAM74 OS=Arabidopsis thaliana GN=PAM74 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.321e-27
Identity = 68/151 (45.03%), Postives = 98/151 (64.90%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEIL 454
            RDIK++NILL E  +AK+ADFG +R  +    G TH+ST V GT GYLDPEY +T +L EKSDVYSFG++L+E++T +  I+  R  K  I+ +W   + + GD   I+DP + N    + ++ ++LELA+ C  P   NRP+M + A  L
Sbjct:  703 RDIKTTNILLDEQLKAKLADFGLSR--SFPIGGETHISTVVAGTPGYLDPEYYQTTRLGEKSDVYSFGIVLLEIITNQPVIDQSRS-KSHIS-QWVGFELTRGDITKIMDPNL-NGDYESRSVWRVLELAMSCANPSSVNRPNMSQVANEL 848          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y4291_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 64/170 (37.65%), Postives = 103/170 (60.59%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWSVRKDYRELAASDVLLQP 511
            RD+K++NILL +N  AK+ADFG +++    E   +HV T V GT GY+DPEY  T++L EKSDVYSFG++L+EL+TG+R I    + ++   V +       GD   ++DPR+    ++N A  K +E+A+ C+  R  NRP+  +       +  D ++  A+++  +P
Sbjct:  703 RDVKTANILLNDNLEAKIADFGLSKVFP--EDDLSHVVTAVMGTPGYVDPEYYNTFKLNEKSDVYSFGIVLLELITGKRSIMKTDDGEKMNVVHYVEPFLKMGDIDGVVDPRLHGDFSSNSAW-KFVEVAMSCVRDRGTNRPNTNQ-------IVSDLKQCLAAELAREP 862          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 70/154 (45.45%), Postives = 95/154 (61.69%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWSV 463
            RD+KS+NILL E   AKVADFG   L+ D   G  HVST VKG+ GYLDPEY +  QLT+KSDVYSFGV+L+E +  R  I P+   ++    +WAM     G    I+DP +   A N  +++K  E A +CLA    +RP+M    ++LW++
Sbjct:  648 RDVKSTNILLDEALVAKVADFG---LSKDVAFGQNHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLLEALCARPAINPQLPREQVNLAEWAMLWKQKGLLEKIIDPHLVG-AVNPESMKKFAEAAEKCLADYGVDRPTM---GDVLWNL 794          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.185e-26
Identity = 71/170 (41.76%), Postives = 100/170 (58.82%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWSVRKDYRELAASDVLLQP 511
            RD+K++NILL EN  AKVADFG ++     +   THVST VKG+ GYLDPEY +  QLTEKSDVYSFGV+L+E++  R  + P    ++    +WAM     G    I+D  +     N  +L+K  E A +CLA    +RPSM    ++LW++    +    S  L++P
Sbjct:  633 RDVKTTNILLDENLVAKVADFGLSKTGPSLDQ--THVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCCRPALNPVLPREQVNIAEWAMAWQKKGLLDQIMDSNLTG-KVNPASLKKFGETAEKCLAEYGVDRPSM---GDVLWNLEYALQLEETSSALMEP 796          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y5189_ARATH (Probable LRR receptor-like protein kinase At1g51890 OS=Arabidopsis thaliana GN=At1g51890 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.548e-26
Identity = 67/144 (46.53%), Postives = 93/144 (64.58%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSM 433
            RD+K +NILL E  +AK+ADFG +R  +    G +HV T V GT GYLDPEY +T  L+EKSDVYSFGV+L+E+VT  +P+  K   +  I  +W M   ++GD  SI+DP++      N  + K++ELAL C+ P    RP+M
Sbjct:  693 RDVKPTNILLNERSQAKLADFGLSR--SFPVDGESHVMTVVAGTPGYLDPEYYRTNWLSEKSDVYSFGVVLLEIVT-NQPVMNKNRERPHIN-EWVMFMLTNGDIKSIVDPKLNEDYDTN-GVWKVVELALACVNPSSSRRPTM 831          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y4391_ARATH (Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.548e-26
Identity = 69/154 (44.81%), Postives = 95/154 (61.69%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWSV 463
            RD+KS+NILL E   AKVADFG   L+ D   G  HVST VKG+ GYLDPEY +  QLT+KSDVYSFGV+L+E +  R  I P+   ++    +WAM+    G    I+DP +  T  N  +++K  E A +CL     +RP+M    ++LW++
Sbjct:  649 RDVKSTNILLDEALVAKVADFG---LSKDVAFGQNHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLLEALCARPAINPQLPREQVNLAEWAMQWKRKGLLEKIIDPHLAGT-INPESMKKFAEAAEKCLEDYGVDRPTM---GDVLWNL 795          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.548e-26
Identity = 64/160 (40.00%), Postives = 98/160 (61.25%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWSVRKDYRE 481
            RDIKSSNILL   + AKV+DFG A+L     S +++V+T+V GT GY+ PEY  T  L EKSD+YSFG+L++E++TGR P++  R   E   V W      +  +  ++DP++    ++  AL+++L +AL+C+ P    RP M     +L +    YR+
Sbjct:  279 RDIKSSNILLDRQWNAKVSDFGLAKLLG---SESSYVTTRVMGTFGYVAPEYACTGMLNEKSDIYSFGILIMEIITGRNPVDYSRPQGETNLVDWLKSMVGNRRSEEVVDPKIPEPPSSK-ALKRVLLVALRCVDPDANKRPKMGHIIHMLEAEDLLYRD 434          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.022e-26
Identity = 67/144 (46.53%), Postives = 92/144 (63.89%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSM 433
            RD+K++NILL E+F  K+ADFG +R  +    G THVST V GT GYLDPEY +T  LTEKSDVYSFGV+L+ ++T +  I+  RE  +R   +W     + GD  SI DP +     N+ ++ K +ELA+ C+ P    RP+M
Sbjct:  701 RDVKTTNILLNEHFDTKLADFGLSR--SFPIEGETHVSTVVAGTIGYLDPEYYRTNWLTEKSDVYSFGVVLLVMITNQPVIDQNRE--KRHIAEWVGGMLTKGDIKSITDPNLLGD-YNSGSVWKAVELAMSCMNPSSMTRPTM 839          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: WAKLI_ARATH (Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.641e-26
Identity = 68/164 (41.46%), Postives = 98/164 (59.76%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKIL---ELALQCLAPRRQNRPSMRRCAEILWSVRKDYREL 484
            RD+K++NILL E +RAKV+DFG +R         TH++T V GT GYLDPEY +T Q T+KSDVYSFGV+LVEL+TG +P    R  + R  V    +       + I+D R++        LE++L   +LA +CL+ + + RP+MR  +  L  +R    +L
Sbjct:  545 RDVKTTNILLDEKYRAKVSDFGTSR---SINVDQTHLTTLVAGTFGYLDPEYFQTSQFTDKSDVYSFGVVLVELITGEKPFSVMRPEENRGLVSHFNEAMKQNRVLDIVDSRIK----EGCTLEQVLAVAKLARRCLSLKGKKRPNMREVSVELERIRSSPEDL 701          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: ERECT_ARATH (LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.641e-26
Identity = 63/165 (38.18%), Postives = 101/165 (61.21%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWSVRKDYRELAASD 496
            RD+KSSNILL ++  A++ DFG A+    ++S   H ST V GT GY+DPEY +T +LTEKSDVYS+G++L+EL+T R+ ++ +  L   I     M K  + + + + DP + +T  +   ++K+ +LAL C   +  +RP+M +   +L S     +  AA+D
Sbjct:  772 RDVKSSNILLDKDLEARLTDFGIAKSLCVSKS---HTSTYVMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTRRKAVDDESNLHHLI-----MSKTGNNEVMEMADPDITSTCKDLGVVKKVFQLALLCTKRQPNDRPTMHQVTRVLGSFMLSEQPPAATD 928          
The following BLAST results are available for this feature:
BLAST of CX288960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
PAM74_ARATH5.321e-2745.03Probable LRR receptor-like serine/threonine-protei... [more]
Y4291_ARATH6.949e-2737.65Probable LRR receptor-like serine/threonine-protei... [more]
Y2214_ARATH9.075e-2745.45Probable receptor-like protein kinase At2g21480 OS... [more]
THE1_ARATH1.185e-2641.76Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
Y5189_ARATH1.548e-2646.53Probable LRR receptor-like protein kinase At1g5189... [more]
Y4391_ARATH1.548e-2644.81Probable receptor-like protein kinase At4g39110 OS... [more]
Y1154_ARATH1.548e-2640.00Probable serine/threonine-protein kinase At1g01540... [more]
Y5181_ARATH2.022e-2646.53Probable LRR receptor-like serine/threonine-protei... [more]
WAKLI_ARATH2.641e-2641.46Wall-associated receptor kinase-like 22 OS=Arabido... [more]
ERECT_ARATH2.641e-2638.18LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionC02007D07SK IF1 Citrus clementina cDNA clone C02007D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288960 ID=CX288960; Name=CX288960; organism=Citrus clementina; type=EST; length=558bp
TAGAGACATAAAGTCCTCCAACATTCTCCTCACTGAAAACTTTCGAGCCA
AGGTAGCGGACTTTGGTTTTGCTAGATTAGCAGCTGATACTGAGTCAGGT
GCCACCCATGTATCAACCCAAGTTAAAGGAACTGCTGGCTACTTGGATCC
GGAATACCTGAAAACCTATCAACTTACTGAGAAGAGCGATGTTTATTCAT
TTGGTGTGTTACTGGTTGAACTCGTCACTGGAAGGCGCCCAATTGAACCA
AAAAGGGAACTCAAAGAGCGAATAACTGTAAAATGGGCAATGAAGAAATT
TTCTGATGGAGATGCCATTTCAATCTTGGACCCAAGGGTAGAAAACACTG
CAGCTAATAACTTGGCTCTTGAAAAGATACTTGAACTAGCCTTGCAATGC
TTGGCTCCACGCAGACAAAATCGGCCAAGCATGAGAAGATGTGCAGAGAT
CCTGTGGAGTGTACGTAAGGATTACAGAGAGCTAGCAGCTTCAGATGTCC
TTTTACAACCCTCTTATTCCAAAAGGAGCAATTCGACAAGAGAACAATAA
CAGCTTCA
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