CX288960

Overview
NameCX288960
Unique NameCX288960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.038e-22
Identity = 58/152 (38.16%), Postives = 96/152 (63.16%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEP-KRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEIL 454
            RD+K++NILL E+F A V DFG A+L    +S   HV+T V+GT G++ PEYL T Q +EK+DV+ FGVL++EL+TG + I+    ++++ + + W     ++     ++D  ++    ++L LE+++ELAL C  P    RP M +  ++L
Sbjct:  425 RDVKAANILLDESFEAIVGDFGLAKLLDQRDS---HVTTAVRGTIGHIAPEYLSTGQSSEKTDVFGFGVLILELITGHKMIDQGNGQVRKGMILSWVRTLKAEKRFAEMVDRDLKG-EFDDLVLEEVVELALLCTQPHPNLRPRMSQVLKVL 572          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: IKU2_ARATH (Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22
Identity = 63/179 (35.20%), Postives = 101/179 (56.42%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPK-RELKERITVKWAMKKFSDGD-AISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWSVRKDYRELAASDVLLQPSYSKRSN 532
            RD+KSSNILL E +R ++ADFG A++           +  VKGT GY+ PEY  T ++ EKSDVYSFGV+L+ELVTG++P+E    E  + +   W++ K ++ +  + ++D  +E+    +    K+L +AL C     Q RP M+    +L  +   Y + +      + SY + +N
Sbjct:  813 RDVKSSNILLDEEWRPRIADFGLAKIIQADSVQRDFSAPLVKGTLGYIAPEYAYTTKVNEKSDVYSFGVVLMELVTGKKPLETDFGENNDIVMWVWSVSKETNREMMMKLIDTSIEDEYKEDAL--KVLTIALLCTDKSPQARPFMKSVVSMLEKIEPSYNKNSG-----EASYGESAN 984          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: WAK5_ARATH (Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.313e-22
Identity = 62/155 (40.00%), Postives = 91/155 (58.71%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWSVR 466
            RD+K++NILL EN  AKVADFG +RL    +   T   T V+GT GYLDPEY  T  L EKSDVYSFGV+L+EL++G + +  +R    +  V + +    +     I+D +V N   N   +++   +A++C     + RPSM+  A  L ++R
Sbjct:  532 RDVKTANILLDENLTAKVADFGASRLIPMDQEQLT---TMVQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGEKALCFERPQSSKHLVSYFVSAMKENRLHEIIDGQVMN-EYNQREIQESARIAVECTRIMGEERPSMKEVAAELEALR 682          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.313e-22
Identity = 58/152 (38.16%), Postives = 88/152 (57.89%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAI-SILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEIL 454
            RD K+SNILL  N+ AK++DFG A+L    E   +HV+T++ GT GY  PEY+ T  L  KSDV++FGV+L+E++TG      KR   +   V W   + S+   +  I+D  ++      +A E +  + L C+ P  +NRP M+   E+L
Sbjct:  217 RDFKASNILLDSNYDAKLSDFGLAKLGPADEK--SHVTTRIMGTYGYAAPEYMATGHLYVKSDVFAFGVVLLEIMTGLTAHNTKRPRGQESLVDWLRPELSNKHRVKQIMDKGIKGQYTTKVATE-MARITLSCIEPDPKNRPHMKEVVEVL 365          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22
Identity = 63/152 (41.45%), Postives = 92/152 (60.53%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKF-SDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEIL 454
            RDIK+SNILL  +F AK++DFG AR     E   ++VST+V GT GY  PEY+ T  L  +SDVYSFGV+L+EL+ GR+ ++  R  KE+  V WA     S    + I+D R+ N+        ++  +A+QCL+   ++RP+M +    L
Sbjct:  196 RDIKASNILLDSDFNAKLSDFGLARDGPMGEQ--SYVSTRVMGTFGYAAPEYVSTGHLNARSDVYSFGVVLLELLCGRQALDHNRPAKEQNLVDWARPYLTSRRKVLLIVDTRL-NSQYKPEGAVRLASIAVQCLSFEPKSRPTMDQVVRAL 344          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22
Identity = 60/156 (38.46%), Postives = 88/156 (56.41%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAI--SILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWSV 463
            RD+K SNILL ++ RAKVADFG  RLA +   G   + T++ GT GYL PEY  T ++T K DVYSFGV+L+EL+TGR+ ++  +  +    V W  + + + +A     +D  ++       ++  + ELA  C A     RP M     IL S+
Sbjct:  716 RDLKPSNILLGDDMRAKVADFGLVRLAPE---GKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELITGRKSLDESQPEESIHLVSWFKRMYINKEASFKKAIDTTIDLDEETLASVHTVAELAGHCCAREPYQRPDMGHAVNILSSL 868          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22
Identity = 67/180 (37.22%), Postives = 105/180 (58.33%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESG-ATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAI-SILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWSVRKDYRELAASDVLLQPSYSKRSNS 535
            RD K+SNILL   + AK++DFG   LA D  +G  +HVST++ GT GY  PEYL T  LT KSDVYS+GV+L+E+++GRR ++  R   E+  V+WA    ++   +  ++D R+++  +   A  K+  LAL+CL    + RP+M      L  ++        +  ++Q    +RS+S
Sbjct:  203 RDFKTSNILLDSEYNAKLSDFG---LAKDGPTGDKSHVSTRIMGTYGYAAPEYLATGHLTTKSDVYSYGVVLLEVLSGRRAVDKNRPPGEQKLVEWARPLLANKRKLFRVIDNRLQDQYSMEEAC-KVATLALRCLTFEIKLRPNMNEVVSHLEHIQTLNEAGGRNIDMVQRRMRRRSDS 378          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: WAK4_ARATH (Wall-associated receptor kinase 4 OS=Arabidopsis thaliana GN=WAK4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.153e-22
Identity = 64/156 (41.03%), Postives = 92/156 (58.97%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAA-DTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRVENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWSVR 466
            RDIK++NILL EN  AKVADFG +RL   D E     ++T V+GT GYLDPEY  T  L EKSDVYSFGV+L+EL++G++ +  +R    +  V +      +     I+D +V N   N   ++K   +A++C     + RP M+  A  L ++R
Sbjct:  534 RDIKTANILLDENLTAKVADFGASRLIPMDKED----LATMVQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKALCFERPQTSKHIVSYFASATKENRLHEIIDGQVMN-ENNQREIQKAARIAVECTRLTGEERPGMKEVAAELEALR 684          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: Y1839_ARATH (Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 60/159 (37.74%), Postives = 90/159 (56.60%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAISILDPRV--ENTAANNLALEKILELALQCLAPRRQNRPSMRRCAEILWSVRKD 472
            RD+KS+NILL +NF  KVADFG +RL    +   THVST  +GT GY+DP+Y   YQL+ KSDVYSF V+L+EL++    ++  R  +E      A+ K  + +   ++DP +  +        +  + ELA QCL   +  RP M    + L  ++ +
Sbjct:  467 RDVKSNNILLDQNFNVKVADFGLSRLFPMDK---THVSTAPQGTPGYVDPDYHLCYQLSNKSDVYSFAVVLMELISSLPAVDITRPRQEINLSNMAVVKIQNHELRDMVDPSLGFDTDTRVRQTVIAVAELAFQCLQSDKDLRPCMSHVQDTLTRIQNN 622          
BLAST of CX288960 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 63/145 (43.45%), Postives = 85/145 (58.62%), Query Frame = 2
Query:    2 RDIKSSNILLTENFRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKRELKERITVKWAMKKFSDGDAI-SILDPRVENTAANNLALEKILELALQCLAPRRQNRPSM 433
            RD K++NILL  +F AK++DFG A+     ++  THVST+V GT GY  PEY+ T +LT KSDVYSFGV+L+EL++GRR ++      E   V WA     D   +  I+D ++        A      LALQCL P  + RP M
Sbjct:  218 RDFKAANILLDADFNAKLSDFGLAKAGPTGDN--THVSTKVIGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELISGRRAMDNSNGGNEYSLVDWATPYLGDKRKLFRIMDTKLGGQYPQKGAF-TAANLALQCLNPDAKLRPKM 359          
The following BLAST results are available for this feature:
BLAST of CX288960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
Y5457_ARATH1.038e-2238.16Probable LRR receptor-like serine/threonine-protei... [more]
IKU2_ARATH1.356e-2235.20Receptor-like protein kinase HAIKU2 OS=Arabidopsis... [more]
WAK5_ARATH2.313e-2240.00Wall-associated receptor kinase 5 OS=Arabidopsis t... [more]
CX32_ARATH2.313e-2238.16Probable serine/threonine-protein kinase Cx32, chl... [more]
Y3545_ARATH3.946e-2241.45Probable receptor-like protein kinase At3g55450 OS... [more]
TMK1_ARATH3.946e-2238.46Probable receptor protein kinase TMK1 OS=Arabidops... [more]
APK1B_ARATH3.946e-2237.22Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
WAK4_ARATH5.153e-2241.03Wall-associated receptor kinase 4 OS=Arabidopsis t... [more]
Y1839_ARATH6.731e-2237.74Probable serine/threonine-protein kinase At1g18390... [more]
APK2A_ARATH6.731e-2243.45Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC02007D07SK IF1 Citrus clementina cDNA clone C02007D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288960 ID=CX288960; Name=CX288960; organism=Citrus clementina; type=EST; length=558bp
TAGAGACATAAAGTCCTCCAACATTCTCCTCACTGAAAACTTTCGAGCCA
AGGTAGCGGACTTTGGTTTTGCTAGATTAGCAGCTGATACTGAGTCAGGT
GCCACCCATGTATCAACCCAAGTTAAAGGAACTGCTGGCTACTTGGATCC
GGAATACCTGAAAACCTATCAACTTACTGAGAAGAGCGATGTTTATTCAT
TTGGTGTGTTACTGGTTGAACTCGTCACTGGAAGGCGCCCAATTGAACCA
AAAAGGGAACTCAAAGAGCGAATAACTGTAAAATGGGCAATGAAGAAATT
TTCTGATGGAGATGCCATTTCAATCTTGGACCCAAGGGTAGAAAACACTG
CAGCTAATAACTTGGCTCTTGAAAAGATACTTGAACTAGCCTTGCAATGC
TTGGCTCCACGCAGACAAAATCGGCCAAGCATGAGAAGATGTGCAGAGAT
CCTGTGGAGTGTACGTAAGGATTACAGAGAGCTAGCAGCTTCAGATGTCC
TTTTACAACCCTCTTATTCCAAAAGGAGCAATTCGACAAGAGAACAATAA
CAGCTTCA
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