CX288961

Overview
NameCX288961
Unique NameCX288961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288961_ssr73 microsatellite CX288961_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig165 contig Ccv1_Contig165:1..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_CAMLR (Adenylate kinase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=adk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.407e-18
Identity = 51/130 (39.23%), Postives = 74/130 (56.92%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIV-EHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF----VLFFDCSEEEMERRILNRNQGREDD 599
            +G PGSGK T  + I  ++   TH S GDLLRAE+ SGSE G  I + I +G +VP EV +  +  A++ +  +  LIDG+PR+ E    F+ V K + E     V+    SEE    R+L R +G +D+
Sbjct:    8 IGAPGSGKTTDASIIANDNANITHYSTGDLLRAEVASGSELGKTIDSFISKGNLVPLEVVVNTIITALKNAPTNTILIDGYPRSVEQMLEFDKVLKNQSEVNLKGVIEVKVSEEVARERVLGRARGADDN 137          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_STRMU (Adenylate kinase OS=Streptococcus mutans GN=adk PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.229e-17
Identity = 50/130 (38.46%), Postives = 78/130 (60.00%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFD----CSEEEMERRILNRNQG 587
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E GT+ ++ I +G++VP EVT  ++++ + ES   K  FL+DG+PR  E   A + +     ++ + V+  D    C  E +  RI+NR  G
Sbjct:    6 MGLPGAGKGTQAAKIVEKFGLAHISTGDMFRAAMANQTEMGTLAKSFIDKGELVPDEVTNGIVKERLSESDITKKGFLLDGYPRTIEQAHALDEILSKLNLKLDGVINIDVDPACLVERLSGRIINRKTG 135          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_STRAW (Adenylate kinase OS=Streptomyces avermitilis GN=adk PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.229e-17
Identity = 50/128 (39.06%), Postives = 75/128 (58.59%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEP---EFVLFFDCSEEEMERRILNRNQGRED 596
            +G PG+GKGTQ A + ++ G  H+S GDL RA I   +E G + ++ + EG +VP EVTI + +  ME+    + FL+DGFPRN +   A + + K E    + VL  +  E+E+ +RI  R   R D
Sbjct:    6 VGPPGAGKGTQAAFLAKNLGIPHISTGDLFRANISQQTELGKLAKSYMDEGNLVPDEVTIAMAKDRMEQPDAVNGFLLDGFPRNVKQAEALDEMLKSEGMKLDAVLDLEVPEDEVVKRIAGRRICRND 133          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_CAMC5 (Adenylate kinase OS=Campylobacter curvus (strain 525.92) GN=adk PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.229e-17
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIV-EHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF----VLFFDCSEEEMERRILNRNQGREDDN 602
            +G PGSGK T  + I  E   Y H S GDLLRAE+ SGSE G  I + I +G +VP EV +  +  A++ S     +IDG+PR+ E     + V   + E     V+  D SE     R+L R +G +D+N
Sbjct:    8 IGAPGSGKTTDASLIAKEDDKYAHFSTGDLLRAEVASGSELGKKIDSFISKGNLVPLEVVVNAIISAIKGSEKSNIIIDGYPRSVEQMTELDKVLSAQNEINLRGVIEVDVSEAIARERVLGRARGADDNN 138          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KADC_MAIZE (Adenylate kinase, chloroplastic OS=Zea mays GN=ADK1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.229e-17
Identity = 43/119 (36.13%), Postives = 74/119 (62.18%), Query Frame = 3
Query:  228 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME--ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 578
            G P SGKGTQC  I   +   H+SAGDLLRAEI +GSENG   +  +++G++VP E+ + ++++ +   ++  + +L+DG+PR+     A E + +I P+  +  D  +E +  R++ R
Sbjct:   12 GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETL-EIRPDTFILLDVPDELLVERVVGR 129          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_THEEB (Adenylate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=adk PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.096e-17
Identity = 51/138 (36.96%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  228 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEEMERRILNR------NQGREDDNVET 611
            GGPGSGKGTQ A +    G  H+S GD+LRAE  +G+  G   Q+ +  G++VP +V + ++   +++      +L+DGFPRN    A FE + K    + +++LF D     ++ R LNR       Q R DD  ET
Sbjct:    7 GGPGSGKGTQAAILTTLLGIPHISTGDILRAERAAGTLLGQQAQSYMDRGELVPDQVIVDMVANRLQQPDTAAGWLLDGFPRNGAQAAVFEEMLKSIHQDYDYLLFLDVPAAILQERALNRAKQAVNGQQRSDDTPET 144          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_PARD8 (Adenylate kinase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=adk PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.096e-17
Identity = 49/134 (36.57%), Postives = 79/134 (58.96%), Query Frame = 3
Query:  228 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI-DGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVET 611
            G PGSGKGTQ   I++ +G  H+S GD+LR E+K+ +E G + ++ I++G++VP E+ + +L   ++     K +I DGFPR      A + +      +   +L     EEE+ +R+L R +  GR DDN+ET
Sbjct:    8 GAPGSGKGTQSELIIKEYGLDHISTGDVLRGEMKAETELGKIAKDYIEKGQLVPDELIVDMLANVLDSKKPAKGVIFDGFPRTIPQAKALKKMLNERGTDVSVMLNLQVEEEELIKRLLERGKVSGRSDDNLET 141          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_YERPY (Adenylate kinase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=adk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.964e-17
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 578
            LG PG+GKGTQ   I+E +G   +S GD+LRA +K+GSE G   + ++  GK+V  E+ I L+ ++  +E   D FL+DGFPR      A +    I+ ++VL FD  +E +  RI+ R
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAGSELGLKAKEIMDAGKLVTDELVIALVKERITQEDCRDGFLLDGFPRTIPQADAMKE-AGIKVDYVLEFDVPDELIVERIVGR 123          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_YERPS (Adenylate kinase OS=Yersinia pseudotuberculosis GN=adk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.964e-17
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 578
            LG PG+GKGTQ   I+E +G   +S GD+LRA +K+GSE G   + ++  GK+V  E+ I L+ ++  +E   D FL+DGFPR      A +    I+ ++VL FD  +E +  RI+ R
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAGSELGLKAKEIMDAGKLVTDELVIALVKERITQEDCRDGFLLDGFPRTIPQADAMKE-AGIKVDYVLEFDVPDELIVERIVGR 123          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_YERPP (Adenylate kinase OS=Yersinia pestis (strain Pestoides F) GN=adk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.964e-17
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 578
            LG PG+GKGTQ   I+E +G   +S GD+LRA +K+GSE G   + ++  GK+V  E+ I L+ ++  +E   D FL+DGFPR      A +    I+ ++VL FD  +E +  RI+ R
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAGSELGLKAKEIMDAGKLVTDELVIALVKERITQEDCRDGFLLDGFPRTIPQADAMKE-AGIKVDYVLEFDVPDELIVERIVGR 123          
The following BLAST results are available for this feature:
BLAST of CX288961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_CAMLR9.407e-1839.23Adenylate kinase OS=Campylobacter lari (strain RM2... [more]
KAD_STRMU1.229e-1738.46Adenylate kinase OS=Streptococcus mutans GN=adk PE... [more]
KAD_STRAW1.229e-1739.06Adenylate kinase OS=Streptomyces avermitilis GN=ad... [more]
KAD_CAMC51.229e-1738.93Adenylate kinase OS=Campylobacter curvus (strain 5... [more]
KADC_MAIZE1.229e-1736.13Adenylate kinase, chloroplastic OS=Zea mays GN=ADK... [more]
KAD_THEEB2.096e-1736.96Adenylate kinase OS=Thermosynechococcus elongatus ... [more]
KAD_PARD82.096e-1736.57Adenylate kinase OS=Parabacteroides distasonis (st... [more]
KAD_YERPY7.964e-1740.34Adenylate kinase OS=Yersinia pseudotuberculosis se... [more]
KAD_YERPS7.964e-1740.34Adenylate kinase OS=Yersinia pseudotuberculosis GN... [more]
KAD_YERPP7.964e-1740.34Adenylate kinase OS=Yersinia pestis (strain Pestoi... [more]

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Properties
Property NameValue
Genbank descriptionC02007D08SK IF1 Citrus clementina cDNA clone C02007D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288961 ID=CX288961; Name=CX288961; organism=Citrus clementina; type=EST; length=613bp
CCCCGGGCTGCAGGAAAAAACTAACATTGGCAATTGGCATCCCTCTGCCT
TCTTTCTTTCCCTCCATATTCTTCTCTCTCTCTCCAAACAAAACAACGCT
CGCAATTCGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCTGATGG
GAACTGTGGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAACTGTG
AAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGTGGAAAAGG
AACCCAGTGCGCAAACATTGTTGAACACTTTGGATACACCCATCTCAGTG
CTGGTGATCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATGGAACC
ATGATTCAGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAGGTCAC
AATTAAGCTTCTCCAAAAAGCAATGGAGGAAAGTGGAAATGATAAATTTC
TCATCGATGGTTTTCCCAGAAACGAGGAAAATCGTGCTGCATTTGAAGCT
GTTACCAAAATTGAGCCAGAATTCGTTCTGTTTTTTGACTGTTCTGAGGA
GGAGATGGAGAGGCGCATTTTGAATAGGAATCAGGGAAGAGAAGATGATA
ACGTTGAGACAAT
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