CX288961

Overview
NameCX288961
Unique NameCX288961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288961_ssr73 microsatellite CX288961_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig165 contig Ccv1_Contig165:1..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_NITOC (Adenylate kinase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=adk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 40/122 (32.79%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRN-EENRAAFEAVTKIEP--EFVLFFDCSEEEMERRILNR 578
            LG PGSGKGTQ   + + +G   +S GDLLRA + +GSE G   +  +  G++V  ++ I ++++ + +    K +++DGFPRN  + +A  E +  +E   + ++  D + E + RR+  R
Sbjct:    6 LGAPGSGKGTQGERLSQQYGIPQVSTGDLLRAAVAAGSELGKQAKAAMDAGELVSDQIVIGIIRERLTQPDAAKGYILDGFPRNFTQAQALDEMLATLERPLQAIILLDVNFEVLMRRLTGR 127          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_MICLU (Adenylate kinase OS=Micrococcus luteus GN=adk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE---FVLFFDCSEEEMERRILNRN--QGREDDNVE 608
            +G PGSGKGTQ   I +  G   +S GD+ R  +KS +  G   +  I  G  VP EVT +++  +  +      FL+DG+PR +    A +A+     +    V+  +  +EE+  R+L R   +GR DD  E
Sbjct:    7 MGPPGSGKGTQATRIADKLGIVPISTGDIFRHNVKSMTPLGVEAKRYIDNGDFVPDEVTNRMVADRIAQADAEHGFLLDGYPRTKGQVEALDAMLAEAGQSLSAVVELEVPDEELVERLLKRAEIEGRADDTQE 140          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_MICLC (Adenylate kinase OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=adk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE---FVLFFDCSEEEMERRILNRN--QGREDDNVE 608
            +G PGSGKGTQ   I +  G   +S GD+ R  +KS +  G   +  I  G  VP EVT +++  +  +      FL+DG+PR +    A +A+     +    V+  +  +EE+  R+L R   +GR DD  E
Sbjct:    7 MGPPGSGKGTQATRIADKLGIVPISTGDIFRHNVKSMTPLGVEAKRYIDNGDFVPDEVTNRMVADRIAQADAEHGFLLDGYPRTKGQVEALDAMLAEAGQSLSAVVELEVPDEELVERLLKRAEIEGRADDTQE 140          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_CLOBK (Adenylate kinase OS=Clostridium botulinum (strain Okra / Type B1) GN=adk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK 509
            LG PG+GKGTQ   I E F   H+S GD+ RA IK  +  G   +  I  G++VP EVTI +++  + +   D  FL+DGFPR      A +   K
Sbjct:    6 LGPPGAGKGTQAKLISEKFSIPHISTGDIFRANIKEKTPLGIEAKRYIDNGQLVPDEVTIGIVKDRLTKDDCDNGFLLDGFPRTVAQAEALDEFLK 101          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_CHRSD (Adenylate kinase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=adk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 41/119 (34.45%), Postives = 65/119 (54.62%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 578
            LG PG+GKGTQ   I E F    +S GD+LRA +K GSE G  ++ ++  G +V  ++ I L+++ + +    + FL DGFPR      A +    ++ + VL     +EE+  R+  R
Sbjct:    6 LGAPGAGKGTQAQFICERFDIPQISTGDMLRAAVKEGSELGLKVKEIMNSGGLVSDDIIIALVKERIAQPDCANGFLFDGFPRTIPQADAMKE-ANVKLDHVLEVAVDDEEIVTRLAGR 123          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_CHLT3 (Adenylate kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=adk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 40/122 (32.79%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  228 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK--AMEESGNDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRILNR 578
            G PG GKGTQ   + E     H+S GD+LR+ IK G+E G   ++ I +G++VP +V I ++++  +++E+    F++DGFPR      A + +    +I  + V+      EE+  R+  R
Sbjct:    7 GPPGVGKGTQAKILSEKHQLAHISTGDMLRSAIKQGTELGLKAKSFIDKGELVPDDVIIGMIEEYVSVQENREQGFILDGFPRTVPQAEALDRLLQKYEIPIDCVISLTADAEEIVARLSGR 128          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_CHLP8 (Adenylate kinase OS=Chlorobaculum parvum (strain NCIB 8327) GN=adk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 578
            LG PG+GKGTQ   I E F    +S GD+LRA +K+ SE G   + ++ EG +VP ++ I L+++ +EE    +  L DGFPR      A      I  + ++  D  +EE+ +R+  R
Sbjct:    6 LGAPGAGKGTQAQYISEAFDIPQISTGDMLRAAVKAQSELGMAAKKVMDEGGLVPDDIIIGLVKERIEEDDCANGCLFDGFPRTIAQADALR-TEGIRIDNIIEIDVPDEEIIKRMSGR 123          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_CHLFF (Adenylate kinase OS=Chlamydophila felis (strain Fe/C-56) GN=adk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 42/121 (34.71%), Postives = 71/121 (58.68%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAF-EAVTKIEPEF-VLFFDCSEEEMERRILNR 578
            +G PGSGKGTQ   + E  G  H+S+G+LLR+ IK+ +  G      I EG++VP+ +  +++Q+ + +S      +IDGFPR  +      + + K   ++ V+  D ++EE+ RRI +R
Sbjct:   10 MGPPGSGKGTQSQCLAEKLGLPHISSGNLLRSAIKASTPLGIKASEYIDEGQLVPNGLVWEIVQETLNKSECLSGCIIDGFPRTLDQAVLLHDFLVKANADYRVIQLDVADEEIIRRIYSR 130          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_CHLCV (Adenylate kinase OS=Chlamydophila caviae GN=adk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAA---FEAVTKIEPEFVLFFDCSEEEMERRILNR 578
            +G PGSGKGTQ   +  H G  H+S+GDL R+ IKS +  G+     I +G +VP  +  +++Q+ + + G     +IDGFPR  +       F   +      V+  D S EE+  RI +R
Sbjct:   10 MGPPGSGKGTQSQRLANHLGLPHISSGDLFRSAIKSATPLGSKAAEYINKGLLVPDNLVWEIVQETLNKPGCKSGCIIDGFPRTLDQAVLLNDFLVKSNAADYRVIQLDVSAEEIISRIHSR 131          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_BUCCC (Adenylate kinase OS=Buchnera aphidicola subsp. Cinara cedri GN=adk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 38/119 (31.93%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 578
            +G PGSGKGTQ   + ++F    +S G++LR EIK   +    I+  I +GK++ +   IK+++K +++    + F++DGFPRN E   +     KI  E++++     +++ +RI  R
Sbjct:    6 IGPPGSGKGTQTQLLSKYFHIPCISTGEILRKEIKKNKKTKKYIKKTINKGKLIKNSFIIKIIEKNIKKKKFFNGFILDGFPRNIEQAKSLS--KKINIEYIIYLKIKYDDIIKRITGR 122          
The following BLAST results are available for this feature:
BLAST of CX288961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_NITOC2.030e-1232.79Adenylate kinase OS=Nitrosococcus oceani (strain A... [more]
KAD_MICLU2.030e-1232.84Adenylate kinase OS=Micrococcus luteus GN=adk PE=3... [more]
KAD_MICLC2.030e-1232.84Adenylate kinase OS=Micrococcus luteus (strain ATC... [more]
KAD_CLOBK2.030e-1240.63Adenylate kinase OS=Clostridium botulinum (strain ... [more]
KAD_CHRSD2.030e-1234.45Adenylate kinase OS=Chromohalobacter salexigens (s... [more]
KAD_CHLT32.030e-1232.79Adenylate kinase OS=Chloroherpeton thalassium (str... [more]
KAD_CHLP82.030e-1236.13Adenylate kinase OS=Chlorobaculum parvum (strain N... [more]
KAD_CHLFF2.030e-1234.71Adenylate kinase OS=Chlamydophila felis (strain Fe... [more]
KAD_CHLCV2.030e-1234.43Adenylate kinase OS=Chlamydophila caviae GN=adk PE... [more]
KAD_BUCCC2.030e-1231.93Adenylate kinase OS=Buchnera aphidicola subsp. Cin... [more]

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Properties
Property NameValue
Genbank descriptionC02007D08SK IF1 Citrus clementina cDNA clone C02007D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288961 ID=CX288961; Name=CX288961; organism=Citrus clementina; type=EST; length=613bp
CCCCGGGCTGCAGGAAAAAACTAACATTGGCAATTGGCATCCCTCTGCCT
TCTTTCTTTCCCTCCATATTCTTCTCTCTCTCTCCAAACAAAACAACGCT
CGCAATTCGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCTGATGG
GAACTGTGGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAACTGTG
AAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGTGGAAAAGG
AACCCAGTGCGCAAACATTGTTGAACACTTTGGATACACCCATCTCAGTG
CTGGTGATCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATGGAACC
ATGATTCAGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAGGTCAC
AATTAAGCTTCTCCAAAAAGCAATGGAGGAAAGTGGAAATGATAAATTTC
TCATCGATGGTTTTCCCAGAAACGAGGAAAATCGTGCTGCATTTGAAGCT
GTTACCAAAATTGAGCCAGAATTCGTTCTGTTTTTTGACTGTTCTGAGGA
GGAGATGGAGAGGCGCATTTTGAATAGGAATCAGGGAAGAGAAGATGATA
ACGTTGAGACAAT
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