CX288961

Overview
NameCX288961
Unique NameCX288961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288961_ssr73 microsatellite CX288961_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig165 contig Ccv1_Contig165:1..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_CAMJR (Adenylate kinase OS=Campylobacter jejuni (strain RM1221) GN=adk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.040e-16
Identity = 50/131 (38.17%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEH--FGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF----VLFFDCSEEEMERRILNRNQGREDD 599
            +G PGSGK T  + I +      TH S GDLLRAE+ SGSE G  I + I +G +VP +V I  +  A++ +     +IDG+PR+ E    F+ V   + E     V+    SEE  + R+L RN+G +D+
Sbjct:    8 IGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVASGSELGKTIDSFISKGNLVPLDVVINTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKVLSEQNEICLKGVIEVRVSEEVAKERVLGRNRGTDDN 138          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_SYNR3 (Adenylate kinase OS=Synechococcus sp. (strain RCC307) GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 49/131 (37.40%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEP-EFVLFFDCSEEEMERRILNRNQGREDDNVE 608
            +G PG+GKGTQ   +  + G  HLS GDLLRAE+K+GSE G   + ++  G++V   + + +++  + +S +  +L+DGFPRN     A +A+     +P + VL  +  ++E+ +R+L R  GR DDN E
Sbjct:    8 VGPPGAGKGTQAERLAANHGLLHLSTGDLLRAEVKAGSELGKEAEAVMNRGELVSDALVLAIVRSRL-QSHSGGWLLDGFPRNLAQAEALDALLSELNQPLQSVLLMELDDDELVQRLLAR--GRADDNEE 135          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_MYCA9 (Adenylate kinase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 52/129 (40.31%), Postives = 72/129 (55.81%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENR---AAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD 599
            LG PG+GKGTQ   I E FG   +S GDL R+ I  G+E G   +  +  G +VPSEVT K+++  ++E      F++DGFPR  +     AA E    +  + VL F    EE+ +R+L R  GR DD
Sbjct:    6 LGPPGAGKGTQAQLISEKFGIPQISTGDLFRSNISEGTELGLQAKQYLDAGDLVPSEVTNKMVEARLDEPDAAAGFILDGFPRTVDQADALAAMEEARGVTIDAVLEFRVPVEELVQRLLGR--GRADD 132          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_HYDS0 (Adenylate kinase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 41/121 (33.88%), Postives = 71/121 (58.68%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR 578
            LG PGSGKGTQ A +     + H+S GD+LRAE+   S  G   +  +K+G +VP ++ I +++  + E+ +  ++ DGFPRN     AFE +    +++ + V +FD  ++ + +R+  R
Sbjct:    6 LGPPGSGKGTQGALLKSELSFEHISTGDMLRAEVSKKSPLGLKAEEYMKQGLLVPDDLIIAMIKNILTEAPHKNYVFDGFPRNVNQAEAFETMLNTMRLQVDKVFYFDLEDDVIIKRLSGR 126          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_ECO8A (Adenylate kinase OS=Escherichia coli O8 (strain IAI1) GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 48/119 (40.34%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 578
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E  ++ FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCHNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGR 123          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_CAMJJ (Adenylate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEH--FGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF----VLFFDCSEEEMERRILNRNQGREDD 599
            +G PGSGK T  + I +      TH S GDLLRAE+ SGSE G  I + I +G +VP +V +  +  A++ +     +IDG+PR+ E    F+ V   + E     V+    SEE  + R+L RN+G +D+
Sbjct:    8 IGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVASGSELGKTIDSFISKGNLVPLDVVVNTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKVLSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDN 138          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_CAMJ8 (Adenylate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEH--FGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF----VLFFDCSEEEMERRILNRNQGREDD 599
            +G PGSGK T  + I +      TH S GDLLRAE+ SGSE G  I + I +G +VP +V +  +  A++ +     +IDG+PR+ E    F+ V   + E     V+    SEE  + R+L RN+G +D+
Sbjct:    8 IGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVASGSELGKTIDSFISKGNLVPLDVVVNTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKVLSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDN 138          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_SHISS (Adenylate kinase OS=Shigella sonnei (strain Ss046) GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.774e-16
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 578
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGR 123          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_SHIFL (Adenylate kinase OS=Shigella flexneri GN=adk PE=3 SV=4)

HSP 1 Score: 85.8853 bits (211), Expect = 1.774e-16
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 578
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGR 123          
BLAST of CX288961 vs. ExPASy Swiss-Prot
Match: KAD_SHIF8 (Adenylate kinase OS=Shigella flexneri serotype 5b (strain 8401) GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.774e-16
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  225 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 578
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGR 123          
The following BLAST results are available for this feature:
BLAST of CX288961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_CAMJR1.040e-1638.17Adenylate kinase OS=Campylobacter jejuni (strain R... [more]
KAD_SYNR31.358e-1637.40Adenylate kinase OS=Synechococcus sp. (strain RCC3... [more]
KAD_MYCA91.358e-1640.31Adenylate kinase OS=Mycobacterium abscessus (strai... [more]
KAD_HYDS01.358e-1633.88Adenylate kinase OS=Hydrogenobaculum sp. (strain Y... [more]
KAD_ECO8A1.358e-1640.34Adenylate kinase OS=Escherichia coli O8 (strain IA... [more]
KAD_CAMJJ1.358e-1637.40Adenylate kinase OS=Campylobacter jejuni subsp. je... [more]
KAD_CAMJ81.358e-1637.40Adenylate kinase OS=Campylobacter jejuni subsp. je... [more]
KAD_SHISS1.774e-1640.34Adenylate kinase OS=Shigella sonnei (strain Ss046)... [more]
KAD_SHIFL1.774e-1640.34Adenylate kinase OS=Shigella flexneri GN=adk PE=3 ... [more]
KAD_SHIF81.774e-1640.34Adenylate kinase OS=Shigella flexneri serotype 5b ... [more]

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Properties
Property NameValue
Genbank descriptionC02007D08SK IF1 Citrus clementina cDNA clone C02007D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288961 ID=CX288961; Name=CX288961; organism=Citrus clementina; type=EST; length=613bp
CCCCGGGCTGCAGGAAAAAACTAACATTGGCAATTGGCATCCCTCTGCCT
TCTTTCTTTCCCTCCATATTCTTCTCTCTCTCTCCAAACAAAACAACGCT
CGCAATTCGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCTGATGG
GAACTGTGGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAACTGTG
AAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGTGGAAAAGG
AACCCAGTGCGCAAACATTGTTGAACACTTTGGATACACCCATCTCAGTG
CTGGTGATCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATGGAACC
ATGATTCAGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAGGTCAC
AATTAAGCTTCTCCAAAAAGCAATGGAGGAAAGTGGAAATGATAAATTTC
TCATCGATGGTTTTCCCAGAAACGAGGAAAATCGTGCTGCATTTGAAGCT
GTTACCAAAATTGAGCCAGAATTCGTTCTGTTTTTTGACTGTTCTGAGGA
GGAGATGGAGAGGCGCATTTTGAATAGGAATCAGGGAAGAGAAGATGATA
ACGTTGAGACAAT
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