CX288976

Overview
NameCX288976
Unique NameCX288976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL_DICDI (Probable ubiquitin carboxyl-terminal hydrolase OS=Dictyostelium discoideum GN=uch1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.204e-35
Identity = 77/182 (42.31%), Postives = 115/182 (63.19%), Query Frame = 2
Query:   83 KRWLPLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDKKE----FSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDT---EATDDVNDHFICFTCVDGELYELD 607
            K W+PLEANP+V+  F+  LG+  +   C D+YG+D+ LL MVP P +AV+ L+P+T + E++R   + + +E     S  VYFMKQ +GNACGTIG++H+V N  + I+F  + FF +F   T +L  +ERA  L  + E+E +H ++A  G +   +  + V  HF+ F  VDG LYELD
Sbjct:   12 KNWIPLEANPEVLTTFMQSLGVSKDWEFC-DIYGIDEGLLEMVPSPCVAVILLFPITNEYEDKRYKLEKEIEEKGQVLSDKVYFMKQYIGNACGTIGVIHSVLNNANVIEFNENGFFKQFLDKTTSLSTEERAISLLKNSEIEKSHEISALQGQSNVPQEDEPVVLHFVSFVHVDGHLYELD 192          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL1_HUMAN (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Homo sapiens GN=UCHL1 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.204e-35
Identity = 78/173 (45.09%), Postives = 105/173 (60.69%), Query Frame = 2
Query:   95 PLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDKK--EFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELD 607
            P+E NP+++N+ L  LG+ A +    DV GL++E L  VP P  A+L L+PLTAQ E  R+ Q  + K  E S  VYFMKQT+GN+CGTIGL+HAV N   ++ F+  S   +F   T  + P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELD
Sbjct:    5 PMEINPEMLNKVLSRLGV-AGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELD 176          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL1_MACFA (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Macaca fascicularis GN=UCHL1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.911e-35
Identity = 77/173 (44.51%), Postives = 105/173 (60.69%), Query Frame = 2
Query:   95 PLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDKK--EFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELD 607
            P+E NP+++N+ L  LG+ A +    DV GL+++ L  VP P  A+L L+PLTAQ E  R+ Q  + K  E S  VYFMKQT+GN+CGTIGL+HAV N   ++ F+  S   +F   T  + P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELD
Sbjct:    5 PMEINPEMLNKVLSRLGV-AGQWRFVDVLGLEEDSLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELD 176          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL_APLCA (Ubiquitin carboxyl-terminal hydrolase OS=Aplysia californica GN=UCH PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.519e-33
Identity = 75/180 (41.67%), Postives = 108/180 (60.00%), Query Frame = 2
Query:   77 SAKRWLPLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELD 607
            S +RW+PLE+NP V+N+++  LG+ A      DV+GLD ELLAMVP+P  A++ L+P     E   +L    + ++  ++Y+ KQT+GNACGT+ ++HA+ N  + I F A   F  F + T  L+P+ERA  LE D  M  AH   A  GDT+A    + V  HF+     +G LYELD
Sbjct:    3 SEQRWIPLESNPKVLNKYVHNLGMDAGW-NFVDVFGLDPELLAMVPRPAAALVLLFP--DDKETVNQLIGEYQSDYPDSLYYTKQTIGNACGTVAIVHALANNENVIPFDAAKHFKTFLEKTKPLNPEERAKHLEQDNLMGAAHGDCAQEGDTQAPSQDEHVKSHFVALVHCNGTLYELD 179          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL1_BOVIN (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Bos taurus GN=UCHL1 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.931e-31
Identity = 77/202 (38.12%), Postives = 109/202 (53.96%), Query Frame = 2
Query:   95 PLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQ---------------------------SEEE----RRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELD 607
            P+E NP+++N+ L  LG+ A +    DV GL++E L  VP P  A+L L+PLTAQ                           S+ E    +++++   +E S  VYFMKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELD
Sbjct:    5 PMEINPEMLNKVLTRLGV-AGQWRFEDVLGLEEESLGSVPAPACALLLLFPLTAQRCFKLGREAASRFHHPDYPGRLFILLVSQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELD 205          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UCHL_DROME (Ubiquitin carboxyl-terminal hydrolase OS=Drosophila melanogaster GN=Uch PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 8.689e-24
Identity = 64/181 (35.36%), Postives = 104/181 (57.46%), Query Frame = 2
Query:   89 WLPLEANPDVMNQFLCGLGL-PAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDK-----KEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEAT--DDVNDHFICFTCVDGELYELD 607
            W PLE+NP+V+ +++  LG+ PA      DV GL+D+ L  +P+PV A + L+P  +++ E+ R +++D+     ++  +++++M+Q   NACGT+ L+H+V N   E+        D F + TA+L P+ER   LE D++    H   A  G T A   + V  HFI     +G LYELD
Sbjct:    4 WTPLESNPEVLTKYIHKLGVSPAWSVT--DVIGLEDDTLEWIPRPVKAFILLFP-CSETYEKHRAEEHDRIKEVEEQHPEDLFYMRQFTHNACGTVALIHSVAN-NKEVDIDRGVLKD-FLEKTASLSPEERGRALEKDEKFTADHEALAQEGQTNAANHEKVIHHFIALVNKEGTLYELD 179          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UBLH1_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 1 OS=Schizosaccharomyces pombe GN=uch1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.875e-18
Identity = 60/183 (32.79%), Postives = 94/183 (51.37%), Query Frame = 2
Query:   89 WLPLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSE--EERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAA----SAGDTEATDDVNDHFICF----TCVDGELYELD 607
            W PLE  P+V+  +L  +G+  ++A  +D++ L+ E+   +P+PV A+LF++P +      +  R+   D    S  V +  QT+ NACGTIGLLHAV N     K   + F     ++      +ERA  +E+ KE+E  H+  A        +E   + + HFICF    +  D   YELD
Sbjct:    2 WRPLENTPEVLEPYLQKIGV--QDASVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKGSRILPKD----SDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAEGSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYELD 177          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UBL1_YEAST (Ubiquitin carboxyl-terminal hydrolase YUH1 OS=Saccharomyces cerevisiae GN=YUH1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 59/180 (32.78%), Postives = 95/180 (52.78%), Query Frame = 2
Query:   92 LPLEANPDVMNQFLCGLGLPAEEAECYDVYGLDD-ELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTAN-------LDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELD 607
            +P+E+NP+V   F   LGL  E A  +D+Y L + ELLA +P+PV A++ L+P+     E+R+   + +   S +V + KQ+V NACG   +LH++ N  S ++  +D   D F KS ++        D      F+ N  +  V       +   EAT D N H+I +   +G ++ELD
Sbjct:    9 VPIESNPEVFTNFAHKLGLKNEWAY-FDIYSLTEPELLAFLPRPVKAIVLLFPIN----EDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPGSD--LDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATADTNLHYITYVEENGGIFELD 181          
BLAST of CX288976 vs. ExPASy Swiss-Prot
Match: UBH4_CAEEL (Probable ubiquitin carboxyl-terminal hydrolase ubh-4 OS=Caenorhabditis elegans GN=ubh-4 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 46/185 (24.86%), Postives = 89/185 (48.11%), Query Frame = 2
Query:   80 AKRWLPLEANPDVMNQFLCGLGLPAEEAECYDVYGLDDELLAMVPQPVLAVLFLYPLTAQSEEERRLQDNDKKEFSKNVYFMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHS---------VAASAGDTEATDDVNDHFICFTCVDGELYELD 607
            A  W  +E++P V  + L G G+   + E  ++Y LDD+    + +P   ++FL+    Q +E   +  +      +N++F  QT+ NAC T  L++ + NV  +   +  +  +++ +   +LDP  R   L N +E+   H+         +    G++E     N HF+ +  +  ++YELD
Sbjct:    4 AGSWCLIESDPGVFTEMLRGFGVDGLQVE--ELYSLDDD--KAMTRPTYGLIFLFKWR-QGDETTGIPSD-----KQNIFFAHQTIQNACATQALINLLMNV-EDTDVKLGNILNQYKEFAIDLDPNTRGHCLSNSEEIRTVHNSFSRQTLFELDIKGGESED----NYHFVTYVPIGNKVYELD 173          
The following BLAST results are available for this feature:
BLAST of CX288976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
UCHL_DICDI2.204e-3542.31Probable ubiquitin carboxyl-terminal hydrolase OS=... [more]
UCHL1_HUMAN2.204e-3545.09Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_MACFA4.911e-3544.51Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL_APLCA3.519e-3341.67Ubiquitin carboxyl-terminal hydrolase OS=Aplysia c... [more]
UCHL1_BOVIN1.931e-3138.12Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL_DROME8.689e-2435.36Ubiquitin carboxyl-terminal hydrolase OS=Drosophil... [more]
UBLH1_SCHPO1.875e-1832.79Probable ubiquitin carboxyl-terminal hydrolase 1 O... [more]
UBL1_YEAST5.106e-1632.78Ubiquitin carboxyl-terminal hydrolase YUH1 OS=Sacc... [more]
UBH4_CAEEL8.435e-1124.86Probable ubiquitin carboxyl-terminal hydrolase ubh... [more]

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Properties
Property NameValue
Genbank descriptionC02007E12SK IF1 Citrus clementina cDNA clone C02007E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288976 ID=CX288976; Name=CX288976; organism=Citrus clementina; type=EST; length=608bp
GACATTATTTTTTATTCGGTGTTTCTTCTGATCTAGCTAAAGAGAAAGCA
AAATGGCAGCAGTAGACGAGCGTCCTTCAGCTAAGAGGTGGCTCCCTCTT
GAAGCTAATCCCGATGTCATGAACCAGTTCCTTTGTGGCCTCGGTCTTCC
AGCTGAGGAGGCTGAGTGCTATGATGTGTATGGCTTGGATGATGAGCTCT
TGGCAATGGTTCCGCAACCTGTTCTTGCCGTGCTGTTTCTTTATCCCTTA
ACTGCACAGAGTGAAGAAGAAAGAAGGTTGCAGGACAATGACAAAAAGGA
ATTTAGCAAGAATGTTTATTTCATGAAGCAAACTGTTGGAAATGCTTGTG
GAACAATTGGACTTCTTCATGCTGTTGGGAACGTCACTTCGGAAATCAAG
TTTCAAGCTGATTCATTCTTCGATAAATTTTACAAGTCCACAGCGAACTT
GGATCCACAAGAGCGTGCAGCATTTCTTGAGAATGATAAGGAAATGGAAG
TTGCTCATTCGGTAGCAGCTTCAGCTGGTGACACAGAGGCTACCGATGAC
GTGAATGATCATTTTATCTGCTTCACCTGTGTGGATGGGGAACTTTATGA
ACTTGATG
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