CX288978

Overview
NameCX288978
Unique NameCX288978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.030e-94
Identity = 159/186 (85.48%), Postives = 178/186 (95.70%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHF L +YAP+ISAEKAYH QL+VAE+T++ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T+VAE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 ALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_LEPDS (Tubulin alpha chain OS=Lepidoglyphus destructor PE=1 SV=2)

HSP 1 Score: 344.354 bits (882), Expect = 2.296e-94
Identity = 159/186 (85.48%), Postives = 177/186 (95.16%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHF L +YAPVIS+EKAYH QL+V+EITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 ALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSEKAYHEQLTVSEITNTCFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA3_HOMAM (Tubulin alpha-3 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 2.998e-94
Identity = 159/186 (85.48%), Postives = 176/186 (94.62%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKAYH QLSV+EITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPPT VPGGDLAKV RAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEKDY
Sbjct:  247 ALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDY 432          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 2.998e-94
Identity = 160/186 (86.02%), Postives = 175/186 (94.09%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKAYH QLSVAEITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKRTIQFVDWCPTGFK GINYQPPTVVPG DLAKV RAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEKDY
Sbjct:  247 ALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDY 432          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA2_DROME (Tubulin alpha-2 chain OS=Drosophila melanogaster GN=alphaTub85E PE=1 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 5.114e-94
Identity = 158/186 (84.95%), Postives = 177/186 (95.16%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHF L++YAPVIS EKAYH QL+VAEITN+ FEP++ M KCDPR GKYMACC++YRGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEKDY
Sbjct:  247 ALNVDLTEFQTNLVPYPRIHFPLATYAPVISVEKAYHEQLTVAEITNACFEPANQMVKCDPRRGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFAEAREDLAALEKDY 432          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA3E_HUMAN (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2)

HSP 1 Score: 342.428 bits (877), Expect = 8.724e-94
Identity = 160/185 (86.49%), Postives = 176/185 (95.14%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 555
            ALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYH QLSVAEITN+ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+ HKFDLMYAK AFVHWYVGEGMEEGEFSEAREDLAALEKD
Sbjct:  247 ALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLVHKFDLMYAKWAFVHWYVGEGMEEGEFSEAREDLAALEKD 431          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 1.488e-93
Identity = 158/186 (84.95%), Postives = 177/186 (95.16%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHF L +YAP+ISAEKAYH QL+VAE+T++ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPPTVV GGDLAKVQRAVCM+SN+T+VAE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:   36 ALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVLGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 221          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_HAECO (Tubulin alpha chain OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 9.645e-93
Identity = 158/186 (84.95%), Postives = 175/186 (94.09%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHF L++++PVISAEKAYH QLSVAEITN  FEP + M KCDPRHGKYMA CL++RGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 ALNVDLTEFQTNLVPYPRIHFPLATFSPVISAEKAYHEQLSVAEITNMCFEPHNQMVKCDPRHGKYMAVCLLFRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 337.421 bits (864), Expect = 2.806e-92
Identity = 165/186 (88.71%), Postives = 169/186 (90.86%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVDVTEFQTNLVPYP +        P   AEKAYH QLSVAEITNSAFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP GD AKV RAVCMISNST++AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE REDLAALEKDY
Sbjct:  247 ALNVDVTEFQTNLVPYPSVIIR-----PSTPAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDPAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEVREDLAALEKDY 427          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 4.787e-92
Identity = 159/186 (85.48%), Postives = 172/186 (92.47%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHFMLSS APVIS E A H Q S AEITN+AFEP+SMMAKCDPR GKYMACCLM+RGDV PKDVN +VA IKTK+TIQFVDWCPTGFKCGINYQPPTVVP GDLAKV RAVCMISNST+++EVFSRI+ KFDLMY+KRAFVHWYVGEGMEEGEF+EARED+AALEKDY
Sbjct:  247 ALNVDITEFQTNLVPYPRIHFMLSSLAPVISLEMANHEQYSTAEITNAAFEPNSMMAKCDPRRGKYMACCLMFRGDVAPKDVNGSVAAIKTKKTIQFVDWCPTGFKCGINYQPPTVVPDGDLAKVDRAVCMISNSTAISEVFSRINKKFDLMYSKRAFVHWYVGEGMEEGEFNEAREDMAALEKDY 432          
The following BLAST results are available for this feature:
BLAST of CX288978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
TBA_ENTDO1.030e-9485.48Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ... [more]
TBA_LEPDS2.296e-9485.48Tubulin alpha chain OS=Lepidoglyphus destructor PE... [more]
TBA3_HOMAM2.998e-9485.48Tubulin alpha-3 chain OS=Homarus americanus PE=2 S... [more]
TBA1_HOMAM2.998e-9486.02Tubulin alpha-1 chain OS=Homarus americanus PE=2 S... [more]
TBA2_DROME5.114e-9484.95Tubulin alpha-2 chain OS=Drosophila melanogaster G... [more]
TBA3E_HUMAN8.724e-9486.49Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E P... [more]
TBA_OCTVU1.488e-9384.95Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]
TBA_HAECO9.645e-9384.95Tubulin alpha chain OS=Haemonchus contortus PE=2 S... [more]
TBA1_STYLE2.806e-9288.71Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBAN_GUITH4.787e-9285.48Tubulin alpha chain, nucleomorph OS=Guillardia the... [more]

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Properties
Property NameValue
Genbank descriptionC02007F02SK IF1 Citrus clementina cDNA clone C02007F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288978 ID=CX288978; Name=CX288978; organism=Citrus clementina; type=EST; length=558bp
GCTTTGAATGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCC
AAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGA
AGGCCTACCATTAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTT
GAGCCCTCATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACAT
GGCTTGCTGCCTCATGTACCGTGGTGATGTTGTGCCCAAGGATGTCAATG
CAGCTGTTGCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGG
TGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGCCACCAACTGTTGT
TCCTGGTGGTGACCTTGCCAAGGTGCAGAGGGCTGTTTGCATGATCTCCA
ACTCCACCAGTGTGGCAGAGGTGTTCTCTCGCATTGACCACAAGTTTGAT
CTTATGTATGCAAAGCGTGCTTTCGTCCACTGGTATGTTGGCGAGGGTAT
GGAAGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTTGCTGCCCTTGAGA
AGGATTAT
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