CX288978

Overview
NameCX288978
Unique NameCX288978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 3.103e-91
Identity = 153/186 (82.26%), Postives = 173/186 (93.01%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHF L +YAP+IS+E+AYH QLSVAEIT+S FEP++ M KCDPRHGKYMACC++YRGDVVPKDVN A+A IKTKR IQFVDWCPTG K GINYQPPTVVPGGDLA+VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV EGMEEGEF+EAREDLAALEKDY
Sbjct:  122 ALNVDLTEFQTNLVPYPRIHFPLVTYAPIISSERAYHEQLSVAEITSSCFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRNIQFVDWCPTGVKVGINYQPPTVVPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEKDY 307          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 4.052e-91
Identity = 156/186 (83.87%), Postives = 173/186 (93.01%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+ EFQTNLVPYPRIHF L++YA +ISAEKAYH QLSV EITN+ FE S+ M KCDPR GKYMACCL+YRGDVVPKDVNAA+A IKT+R+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  122 ALNVDLIEFQTNLVPYPRIHFPLTTYARIISAEKAYHEQLSVPEITNACFEFSNQMVKCDPRRGKYMACCLLYRGDVVPKDVNAAIAAIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 307          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA2_CAEEL (Tubulin alpha-2 chain OS=Caenorhabditis elegans GN=tba-2 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 9.027e-91
Identity = 154/186 (82.80%), Postives = 172/186 (92.47%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+ EFQTNLVPYPRIHF L++Y P+ISAEKAYH  LSV++ITNS FEP++ M KCDPRHGKYMA CL+YRGDVVPKDVN A+A IKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCM+SN+T++AE +SR+D+KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEKDY
Sbjct:  245 ALNVDLNEFQTNLVPYPRIHFPLAAYTPLISAEKAYHEALSVSDITNSCFEPANQMVKCDPRHGKYMAVCLLYRGDVVPKDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDY 430          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 9.981e-90
Identity = 150/186 (80.65%), Postives = 171/186 (91.94%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHF L++Y+P+ISAEKAYH QLSV EIT++ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDV A++A +KTKRTIQFVDWCPTGFK GINYQPPTVVPG DLAKV RAVCM+SN+T++AE ++R+DHK DLMYAKRAFVHWYVGEGMEE +FSEAREDLA LEKDY
Sbjct:  247 ALNVDLTEFQTNLVPYPRIHFPLTTYSPIISAEKAYHEQLSVGEITSACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVTASIANVKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKVDLMYAKRAFVHWYVGEGMEERQFSEAREDLATLEKDY 432          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 2.718e-87
Identity = 145/186 (77.96%), Postives = 170/186 (91.40%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVP+PRIHF L +YAP+IS+++AYH QLSVAEIT+S FEP++ M KCDP+ GKYMACC++YRGDVVPKDVN A+A IKT R++QFVDWCPTGFK GINYQPP   PGGDLA+VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV EGMEEGEF+EAREDLAALEKDY
Sbjct:  244 ALNVDLTEFQTNLVPFPRIHFPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNNQMVKCDPQQGKYMACCMLYRGDVVPKDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEKDY 429          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.649e-84
Identity = 145/186 (77.96%), Postives = 166/186 (89.25%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            +LNVD+ EFQTNLVPYPRIHF L +YAP+ISA KA+H   SVAEITN+ FEP++ M KCDPR+GKYMA CL+YRGD+V KDVN AV++I+TKRTIQFVDWCPTGFK G+ YQPP  VP GDLAKV RAVCM+SN+TS+AE +SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 SLNVDLNEFQTNLVPYPRIHFPLVTYAPLISAAKAHHEANSVAEITNACFEPNNQMVKCDPRNGKYMATCLLYRGDIVTKDVNCAVSSIRTKRTIQFVDWCPTGFKLGVCYQPPQYVPNGDLAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 4.491e-82
Identity = 142/186 (76.34%), Postives = 164/186 (88.17%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            +LNVD+ EFQTNLVPYPRIHF L +Y+PVISA+KA H   SV +IT S FEP++ M KCDPR+GKYMA CL+YRGDVVPK+ +AAVAT+KTKRTIQFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN+T+++E +S +DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  247 SLNVDLNEFQTNLVPYPRIHFPLVAYSPVISADKASHEANSVQDITMSCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKETHAAVATLKTKRTIQFVDWCPTGFKIGICYQPPQQVPNGDLAKVNRAVCMLSNTTAISEAWSALDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 5.865e-82
Identity = 143/186 (76.88%), Postives = 162/186 (87.10%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            +LNVD+ EFQTNLVPYPRIHF L +YAP++SA KA H   SV EI+ S FEP+S M KCDPR+GKYMA CL+YRGDVVPKDV+ AVAT+KTKRTIQFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN+T++AE +S + HKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  247 SLNVDLNEFQTNLVPYPRIHFPLVAYAPIVSAAKAAHEANSVQEISMSCFEPNSQMVKCDPRNGKYMATCLLYRGDVVPKDVHQAVATLKTKRTIQFVDWCPTGFKIGICYQPPQNVPNGDLAKVNRAVCMLSNTTAIAEAWSALSHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 2.229e-81
Identity = 136/185 (73.51%), Postives = 164/185 (88.65%), Query Frame = 1
Query:    4 LNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            LNVD+ EFQTNLVPYPRIHF +++ AP+ISAEKAY  QLSV+++T S FE S+ + KCDPR GKYMACCL+YRGDVVPKDVN A+A +K++ ++QFVDWCPTGFK GINYQPP VVPGGDLA+VQRAVCM+SN+T++ E ++R+DHKFDLMYAK+AF+HWY+ EGME GEF EAREDLAALEKDY
Sbjct:  255 LNVDLIEFQTNLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTASCFEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCPTGFKVGINYQPPAVVPGGDLARVQRAVCMLSNTTAIVEAWARLDHKFDLMYAKKAFLHWYITEGMELGEFVEAREDLAALEKDY 439          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 2.911e-81
Identity = 143/186 (76.88%), Postives = 160/186 (86.02%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            +LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA H   SV E+T S FEP++ M KCDPRHGKYMA CL+YRGDVVP D +AAVAT+KTKRTIQFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN+T++AE +S +  KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  247 SLNVDLNEFQTNLVPYPRIHFPLVAYAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432          
The following BLAST results are available for this feature:
BLAST of CX288978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
TBA4_CHICK3.103e-9182.26Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]
TBA3_CHICK4.052e-9183.87Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA2_CAEEL9.027e-9182.80Tubulin alpha-2 chain OS=Caenorhabditis elegans GN... [more]
TBA2_HOMAM9.981e-9080.65Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA2_CHICK2.718e-8777.96Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA1_PNECA1.649e-8477.96Tubulin alpha chain OS=Pneumocystis carinii GN=TUB... [more]
TBA1_EMENI4.491e-8276.34Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA_MYCGR5.865e-8276.88Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBAL3_MOUSE2.229e-8173.51Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBA2_NEUCR2.911e-8176.88Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]

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Properties
Property NameValue
Genbank descriptionC02007F02SK IF1 Citrus clementina cDNA clone C02007F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288978 ID=CX288978; Name=CX288978; organism=Citrus clementina; type=EST; length=558bp
GCTTTGAATGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCC
AAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGA
AGGCCTACCATTAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTT
GAGCCCTCATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACAT
GGCTTGCTGCCTCATGTACCGTGGTGATGTTGTGCCCAAGGATGTCAATG
CAGCTGTTGCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGG
TGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGCCACCAACTGTTGT
TCCTGGTGGTGACCTTGCCAAGGTGCAGAGGGCTGTTTGCATGATCTCCA
ACTCCACCAGTGTGGCAGAGGTGTTCTCTCGCATTGACCACAAGTTTGAT
CTTATGTATGCAAAGCGTGCTTTCGTCCACTGGTATGTTGGCGAGGGTAT
GGAAGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTTGCTGCCCTTGAGA
AGGATTAT
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