CX288978
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 333.954 bits (855), Expect = 3.103e-91 Identity = 153/186 (82.26%), Postives = 173/186 (93.01%), Query Frame = 1 Query: 1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558 ALNVD+TEFQTNLVPYPRIHF L +YAP+IS+E+AYH QLSVAEIT+S FEP++ M KCDPRHGKYMACC++YRGDVVPKDVN A+A IKTKR IQFVDWCPTG K GINYQPPTVVPGGDLA+VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV EGMEEGEF+EAREDLAALEKDY Sbjct: 122 ALNVDLTEFQTNLVPYPRIHFPLVTYAPIISSERAYHEQLSVAEITSSCFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRNIQFVDWCPTGVKVGINYQPPTVVPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEKDY 307
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 333.569 bits (854), Expect = 4.052e-91 Identity = 156/186 (83.87%), Postives = 173/186 (93.01%), Query Frame = 1 Query: 1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558 ALNVD+ EFQTNLVPYPRIHF L++YA +ISAEKAYH QLSV EITN+ FE S+ M KCDPR GKYMACCL+YRGDVVPKDVNAA+A IKT+R+IQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY Sbjct: 122 ALNVDLIEFQTNLVPYPRIHFPLTTYARIISAEKAYHEQLSVPEITNACFEFSNQMVKCDPRRGKYMACCLLYRGDVVPKDVNAAIAAIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 307
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA2_CAEEL (Tubulin alpha-2 chain OS=Caenorhabditis elegans GN=tba-2 PE=2 SV=1) HSP 1 Score: 332.413 bits (851), Expect = 9.027e-91 Identity = 154/186 (82.80%), Postives = 172/186 (92.47%), Query Frame = 1 Query: 1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558 ALNVD+ EFQTNLVPYPRIHF L++Y P+ISAEKAYH LSV++ITNS FEP++ M KCDPRHGKYMA CL+YRGDVVPKDVN A+A IKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCM+SN+T++AE +SR+D+KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEKDY Sbjct: 245 ALNVDLNEFQTNLVPYPRIHFPLAAYTPLISAEKAYHEALSVSDITNSCFEPANQMVKCDPRHGKYMAVCLLYRGDVVPKDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDY 430
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1) HSP 1 Score: 328.946 bits (842), Expect = 9.981e-90 Identity = 150/186 (80.65%), Postives = 171/186 (91.94%), Query Frame = 1 Query: 1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558 ALNVD+TEFQTNLVPYPRIHF L++Y+P+ISAEKAYH QLSV EIT++ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDV A++A +KTKRTIQFVDWCPTGFK GINYQPPTVVPG DLAKV RAVCM+SN+T++AE ++R+DHK DLMYAKRAFVHWYVGEGMEE +FSEAREDLA LEKDY Sbjct: 247 ALNVDLTEFQTNLVPYPRIHFPLTTYSPIISAEKAYHEQLSVGEITSACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVTASIANVKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKVDLMYAKRAFVHWYVGEGMEERQFSEAREDLATLEKDY 432
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1) HSP 1 Score: 320.857 bits (821), Expect = 2.718e-87 Identity = 145/186 (77.96%), Postives = 170/186 (91.40%), Query Frame = 1 Query: 1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558 ALNVD+TEFQTNLVP+PRIHF L +YAP+IS+++AYH QLSVAEIT+S FEP++ M KCDP+ GKYMACC++YRGDVVPKDVN A+A IKT R++QFVDWCPTGFK GINYQPP PGGDLA+VQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV EGMEEGEF+EAREDLAALEKDY Sbjct: 244 ALNVDLTEFQTNLVPFPRIHFPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNNQMVKCDPQQGKYMACCMLYRGDVVPKDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEKDY 429
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 1.649e-84 Identity = 145/186 (77.96%), Postives = 166/186 (89.25%), Query Frame = 1 Query: 1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558 +LNVD+ EFQTNLVPYPRIHF L +YAP+ISA KA+H SVAEITN+ FEP++ M KCDPR+GKYMA CL+YRGD+V KDVN AV++I+TKRTIQFVDWCPTGFK G+ YQPP VP GDLAKV RAVCM+SN+TS+AE +SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY Sbjct: 247 SLNVDLNEFQTNLVPYPRIHFPLVTYAPLISAAKAHHEANSVAEITNACFEPNNQMVKCDPRNGKYMATCLLYRGDIVTKDVNCAVSSIRTKRTIQFVDWCPTGFKLGVCYQPPQYVPNGDLAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2) HSP 1 Score: 303.523 bits (776), Expect = 4.491e-82 Identity = 142/186 (76.34%), Postives = 164/186 (88.17%), Query Frame = 1 Query: 1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558 +LNVD+ EFQTNLVPYPRIHF L +Y+PVISA+KA H SV +IT S FEP++ M KCDPR+GKYMA CL+YRGDVVPK+ +AAVAT+KTKRTIQFVDWCPTGFK GI YQPP VP GDLAKV RAVCM+SN+T+++E +S +DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY Sbjct: 247 SLNVDLNEFQTNLVPYPRIHFPLVAYSPVISADKASHEANSVQDITMSCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKETHAAVATLKTKRTIQFVDWCPTGFKIGICYQPPQQVPNGDLAKVNRAVCMLSNTTAISEAWSALDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 5.865e-82 Identity = 143/186 (76.88%), Postives = 162/186 (87.10%), Query Frame = 1 Query: 1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558 +LNVD+ EFQTNLVPYPRIHF L +YAP++SA KA H SV EI+ S FEP+S M KCDPR+GKYMA CL+YRGDVVPKDV+ AVAT+KTKRTIQFVDWCPTGFK GI YQPP VP GDLAKV RAVCM+SN+T++AE +S + HKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY Sbjct: 247 SLNVDLNEFQTNLVPYPRIHFPLVAYAPIVSAAKAAHEANSVQEISMSCFEPNSQMVKCDPRNGKYMATCLLYRGDVVPKDVHQAVATLKTKRTIQFVDWCPTGFKIGICYQPPQNVPNGDLAKVNRAVCMLSNTTAIAEAWSALSHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1) HSP 1 Score: 301.212 bits (770), Expect = 2.229e-81 Identity = 136/185 (73.51%), Postives = 164/185 (88.65%), Query Frame = 1 Query: 4 LNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558 LNVD+ EFQTNLVPYPRIHF +++ AP+ISAEKAY QLSV+++T S FE S+ + KCDPR GKYMACCL+YRGDVVPKDVN A+A +K++ ++QFVDWCPTGFK GINYQPP VVPGGDLA+VQRAVCM+SN+T++ E ++R+DHKFDLMYAK+AF+HWY+ EGME GEF EAREDLAALEKDY Sbjct: 255 LNVDLIEFQTNLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTASCFEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCPTGFKVGINYQPPAVVPGGDLARVQRAVCMLSNTTAIVEAWARLDHKFDLMYAKKAFLHWYITEGMELGEFVEAREDLAALEKDY 439
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2) HSP 1 Score: 300.827 bits (769), Expect = 2.911e-81 Identity = 143/186 (76.88%), Postives = 160/186 (86.02%), Query Frame = 1 Query: 1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558 +LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA H SV E+T S FEP++ M KCDPRHGKYMA CL+YRGDVVP D +AAVAT+KTKRTIQFVDWCPTGFK GI YQPP VP GDLAKV RAVCM+SN+T++AE +S + KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DY Sbjct: 247 SLNVDLNEFQTNLVPYPRIHFPLVAYAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432 The following BLAST results are available for this feature:
BLAST of CX288978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 395
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288978 ID=CX288978; Name=CX288978; organism=Citrus clementina; type=EST; length=558bpback to top |