CX288978

Overview
NameCX288978
Unique NameCX288978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 6.281e-76
Identity = 132/186 (70.97%), Postives = 153/186 (82.26%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            +LNVD+ EFQTNLVPYPRIHF L SYAPV S  +A H   SV+EIT S FEP + M KCDPR GKYMA CL+YRGDVV +DV  AVA +K+K+T+Q VDWCPTGFK GI YQPPT + G +LA   RAVCM+SN+T++AE + RID KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALE+DY
Sbjct:  248 SLNVDLNEFQTNLVPYPRIHFPLVSYAPVFSKSRATHEANSVSEITQSCFEPGNQMVKCDPRTGKYMATCLLYRGDVVTRDVQNAVAQVKSKKTVQLVDWCPTGFKIGICYQPPTAIKGSELASASRAVCMLSNTTAIAEAWRRIDRKFDLMYSKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.071e-75
Identity = 129/186 (69.35%), Postives = 155/186 (83.33%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            +LNVD+ EFQTNLVPYPRIHF L SYAP++S ++A H   SV+EITN+ FEP + M KCDP  GKYMA CL+YRGDVV +DV  AV  +K K+T+Q VDWCPTGFK GI Y+PP+V+P  +LA V RAVCM+SN+T++A+ + RID KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALE+DY
Sbjct:  248 SLNVDLNEFQTNLVPYPRIHFPLVSYAPILSKKRATHESNSVSEITNACFEPGNQMVKCDPTKGKYMANCLLYRGDVVTRDVQRAVEQVKNKKTVQMVDWCPTGFKIGICYEPPSVIPSSELANVDRAVCMLSNTTAIADAWKRIDQKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 3.117e-75
Identity = 125/186 (67.20%), Postives = 158/186 (84.95%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ++NVD+ EFQTNLVP+PRIHF L +YAP++SAE++ H Q ++  +TN+ FE S+MM KCDPR GK+MACC++YRGDVVPKDVNAAV+ IK+KR IQFVDWCPTGFK GINY+ P  VP GDLAK  RA CM+SN+T+++  FS + +KFDLM+ KRAFVHWYVGEGMEEGEF+EARE++A LE+D+
Sbjct:  258 SMNVDLNEFQTNLVPFPRIHFPLVAYAPLMSAERSAHEQHAITTLTNACFESSNMMVKCDPRAGKFMACCMLYRGDVVPKDVNAAVSAIKSKRHIQFVDWCPTGFKIGINYEKPAFVPDGDLAKTSRACCMLSNTTAISVAFSNLSYKFDLMFKKRAFVHWYVGEGMEEGEFTEARENIAVLERDF 443          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 5.879e-74
Identity = 129/169 (76.33%), Postives = 147/169 (86.98%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE 507
            +LNVD+ EFQTNLVPYPRIHF L +YAPVISA KA H   SV+EITN+ FEP++ M KCDPR+GKYMA CL+YRGDVV KDVNAAVA ++TKRTIQFVDWCPTGFK G+ YQPP  VP GDLAKV RAVCM+SN+TS+AE + R+DHKFDLMY+KRAFVHWYVGEGMEE
Sbjct:   44 SLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKAVHEANSVSEITNACFEPNNQMVKCDPRNGKYMATCLLYRGDVVTKDVNAAVAAVRTKRTIQFVDWCPTGFKLGVCYQPPQHVPHGDLAKVDRAVCMLSNTTSIAEAWPRLDHKFDLMYSKRAFVHWYVGEGMEE 212          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_LYTPI (Tubulin alpha chain (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.310e-73
Identity = 124/142 (87.32%), Postives = 137/142 (96.48%), Query Frame = 1
Query:  133 ITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ITN+ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:    1 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 142          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 8.489e-73
Identity = 125/186 (67.20%), Postives = 155/186 (83.33%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            +LNVD+TEFQTNLVPYPRIHF L +Y+P++S EKA H +LSV EITN+ FEP + M +CD R GKYMACCL++RGDV PK+ N A A +K KRT QFV+WCPTGFK GIN + PTV+ G  +A+V RAVC +SN+T+++E + R+++KFDLM++KRAFVHWYVGEGMEEGEFSEAREDLA LE DY
Sbjct:  243 SLNVDLTEFQTNLVPYPRIHFPLVAYSPMLSKEKAAHEKLSVQEITNACFEPQNQMVRCDTRKGKYMACCLLFRGDVNPKEANNATANVKAKRTNQFVEWCPTGFKVGINSRKPTVLDGEAMAEVSRAVCALSNTTAISEAWKRLNNKFDLMFSKRAFVHWYVGEGMEEGEFSEAREDLAMLEDDY 428          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 264.233 bits (674), Expect = 3.019e-70
Identity = 125/191 (65.45%), Postives = 151/191 (79.06%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP-----GGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+ EFQTNLVP+PR+H+ L SYAPVISA K+ H     +E+T   FEP++ M  CDPR+GKYMA  L+YRGDVVP+D +AAVA +K K +   V+WCPTGFK GIN+Q P  VP      G LA V R+V M+SN+T++AE +SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLA+LEKDY
Sbjct:  248 ALNVDLNEFQTNLVPFPRVHYPLISYAPVISATKSAHESFKTSELTLQCFEPNNQMVVCDPRNGKYMAVALLYRGDVVPRDTSAAVAALKAKSSFNLVEWCPTGFKIGINHQKPMSVPTASPADGGLASVDRSVSMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLASLEKDY 438          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 3.943e-70
Identity = 121/186 (65.05%), Postives = 149/186 (80.11%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+ EFQTNLVP+PRIH+ L SYAPVIS+ ++ H    V ++T    EP++ M  CDPR+GKYMA  L+YRGD VP+D   A+A++K K +   V+WCPTGFK GINYQ P  VPG +LA V R+V M+SN+T+++E +SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  249 ALNVDLNEFQTNLVPFPRIHYPLISYAPVISSNRSSHESFKVQDLTLQCAEPNNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPGSELAPVDRSVSMLSNTTAISEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 434          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 3.338e-69
Identity = 123/172 (71.51%), Postives = 146/172 (84.88%), Query Frame = 1
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 516
            ALNVD+ EFQTNLVPYPRIHF L+SY+PV+SA KA H   SV E+T   FEP++ M KCDPR+GKYMA CL+YRGDVVPKDV+A  AT+KTKRT+QFVD  PTGFK GI YQPPT+VP GDLAKV RA CM+SN+T+++E ++ + HKFDL+Y+KRAFVHWYVGEGMEEGEF
Sbjct:  248 ALNVDLNEFQTNLVPYPRIHFPLASYSPVVSAGKASHESNSVMEVTIVCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQPTGFKIGICYQPPTMVPNGDLAKVNRA-CMLSNTTAISEAWTALSHKFDLIYSKRAFVHWYVGEGMEEGEF 418          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 4.360e-69
Identity = 117/187 (62.57%), Postives = 152/187 (81.28%), Query Frame = 1
Query:    4 LNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK--RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            LN+D+ + QTNLVP+PR+HF+L SYAPVIS EKA+H  ++V  IT++ F   ++MAKC P  GKYMACCLMYRGD+VPK+   AV  I+++  R + FVDW PTGFKCGIN Q P      ++A+V+++VCM+SN+T++++VFSRI+HKFDLM+ KRAFVHWYVGEGMEEGEF+EAR+DL ALEKDY
Sbjct:  255 LNLDINDIQTNLVPFPRLHFVLCSYAPVISREKAHHETITVDNITSAVFSEKNIMAKCQPNLGKYMACCLMYRGDIVPKEAQKAVQNIRSEKSRNVSFVDWSPTGFKCGINNQAPVSTKDSEMAEVKKSVCMLSNTTAISQVFSRINHKFDLMFVKRAFVHWYVGEGMEEGEFAEARDDLLALEKDY 441          
The following BLAST results are available for this feature:
BLAST of CX288978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
TBA_CANAL6.281e-7670.97Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]
TBA3_YEAST1.071e-7569.35Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA4_DROME3.117e-7567.20Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBAA_PNECA5.879e-7476.33Tubulin alpha chain (Fragment) OS=Pneumocystis car... [more]
TBA_LYTPI1.310e-7387.32Tubulin alpha chain (Fragment) OS=Lytechinus pictu... [more]
TBA_ENCCU8.489e-7367.20Tubulin alpha chain OS=Encephalitozoon cuniculi GN... [more]
TBA1_NEUCR3.019e-7065.45Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBA2_EMENI3.943e-7065.05Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA_AJECA3.338e-6971.51Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA_DICDI4.360e-6962.57Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionC02007F02SK IF1 Citrus clementina cDNA clone C02007F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288978 ID=CX288978; Name=CX288978; organism=Citrus clementina; type=EST; length=558bp
GCTTTGAATGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCC
AAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGA
AGGCCTACCATTAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTT
GAGCCCTCATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACAT
GGCTTGCTGCCTCATGTACCGTGGTGATGTTGTGCCCAAGGATGTCAATG
CAGCTGTTGCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGG
TGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGCCACCAACTGTTGT
TCCTGGTGGTGACCTTGCCAAGGTGCAGAGGGCTGTTTGCATGATCTCCA
ACTCCACCAGTGTGGCAGAGGTGTTCTCTCGCATTGACCACAAGTTTGAT
CTTATGTATGCAAAGCGTGCTTTCGTCCACTGGTATGTTGGCGAGGGTAT
GGAAGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTTGCTGCCCTTGAGA
AGGATTAT
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