CX288978

Overview
NameCX288978
Unique NameCX288978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10330 contig Ccv1_Contig10330:851..1408. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_EUGGR (Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 1.343e-102
Identity = 175/186 (94.09%), Postives = 185/186 (99.46%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHF+LSSYAP+ISAEKAYH QLSVAEITN+AFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNA+VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST++AEVF+RIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 ALNVDITEFQTNLVPYPRIHFVLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFARIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_DAUCA (Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 1.343e-102
Identity = 181/186 (97.31%), Postives = 182/186 (97.85%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTIQFVDWCPTGFKCGINYQ PTVVPGGDLAKVQRAVCMISNSTSVAEVFSRID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQAPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDTKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 1.343e-102
Identity = 177/186 (95.16%), Postives = 183/186 (98.39%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            A+NVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH QLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 AINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 1.343e-102
Identity = 177/186 (95.16%), Postives = 183/186 (98.39%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            A+NVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH QLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 AINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 1.343e-102
Identity = 177/186 (95.16%), Postives = 183/186 (98.39%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            A+NVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH QLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 AINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 1.343e-102
Identity = 177/186 (95.16%), Postives = 183/186 (98.39%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            A+NVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH QLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 AINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 1.343e-102
Identity = 177/186 (95.16%), Postives = 183/186 (98.39%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            A+NVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH QLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 AINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA1_VOLCA (Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 1.754e-102
Identity = 175/186 (94.09%), Postives = 183/186 (98.39%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVDVTEFQTNLVPYPRIHFMLSSYAP+ISAEKAYH QLSVAEITN+AFEP+SMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST++ E+FSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD+
Sbjct:  247 ALNVDVTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDF 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_EUPOC (Tubulin alpha chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 2.290e-102
Identity = 178/186 (95.70%), Postives = 183/186 (98.39%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH QLSVAEITNS+FEP+SMMAKCDPRHGKYMACC+MYRGDVVPKDVNAAVATIKTKRTIQFVDW PTGFKCGINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSSFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA2_ORYSJ (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica GN=TUBA PE=2 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 2.290e-102
Identity = 180/186 (96.77%), Postives = 182/186 (97.85%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVDV EFQTNLVPYPRIHFMLSSYAPVISAEKAYH QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNSTSV EVFSRID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 ALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDIKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
BLAST of CX288978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
TBA_EUGGR1.343e-10294.09Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE... [more]
TBA_DAUCA1.343e-10297.31Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 S... [more]
TBA6_MAIZE1.343e-10295.16Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV... [more]
TBA5_MAIZE1.343e-10295.16Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV... [more]
TBA3_ELEIN1.343e-10295.16Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA1_ORYSJ1.343e-10295.16Tubulin alpha-1 chain OS=Oryza sativa subsp. japon... [more]
TBA1_HORVU1.343e-10295.16Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ... [more]
TBA1_VOLCA1.754e-10294.09Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN... [more]
TBA_EUPOC2.290e-10295.70Tubulin alpha chain OS=Euplotes octocarinatus PE=3... [more]
TBA2_ORYSJ2.290e-10296.77Tubulin alpha-2 chain OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionC02007F02SK IF1 Citrus clementina cDNA clone C02007F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288978 ID=CX288978; Name=CX288978; organism=Citrus clementina; type=EST; length=558bp
GCTTTGAATGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCC
AAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGA
AGGCCTACCATTAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTT
GAGCCCTCATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACAT
GGCTTGCTGCCTCATGTACCGTGGTGATGTTGTGCCCAAGGATGTCAATG
CAGCTGTTGCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGG
TGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGCCACCAACTGTTGT
TCCTGGTGGTGACCTTGCCAAGGTGCAGAGGGCTGTTTGCATGATCTCCA
ACTCCACCAGTGTGGCAGAGGTGTTCTCTCGCATTGACCACAAGTTTGAT
CTTATGTATGCAAAGCGTGCTTTCGTCCACTGGTATGTTGGCGAGGGTAT
GGAAGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTTGCTGCCCTTGAGA
AGGATTAT
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