CX288978

Overview
NameCX288978
Unique NameCX288978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 369.777 bits (948), Expect = 5.102e-102
Identity = 176/186 (94.62%), Postives = 183/186 (98.39%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVDVTEFQTNLVPYPRIHFMLSSYAPV+SAEKAYH QLSV+EITNSAFEP++MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSR+D KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVVSAEKAYHEQLSVSEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDQKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 5.102e-102
Identity = 176/186 (94.62%), Postives = 183/186 (98.39%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVDVTEFQTNLVPYPRIHFMLSSYAPV+SAEKAYH QLSV+EITNSAFEP++MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSR+D KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVVSAEKAYHEQLSVSEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDQKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 5.102e-102
Identity = 173/186 (93.01%), Postives = 183/186 (98.39%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHFMLSSYAP+ISAEKAYH QLSVAEITN+AFEP+SMM KCDPRHGKYMACCLMYRGDVVPKDVNA+VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST++ E+FSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD+
Sbjct:  247 ALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPRHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDF 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 1.939e-101
Identity = 174/186 (93.55%), Postives = 181/186 (97.31%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            A+NVD+TEFQTNLVPYPRIHFMLSSYAPVISA KAYH QLSV EITN+ FEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 AINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 2.532e-101
Identity = 173/186 (93.01%), Postives = 182/186 (97.85%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHFML SYAPVISAEKAYH QL+VAEITNS FEP++MMAKCDPRHGKYMACCLMYRGDVVPKDVNA+VA IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCM+SN+T++AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 ALNVDITEFQTNLVPYPRIHFMLCSYAPVISAEKAYHEQLTVAEITNSVFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNASVAVIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 2.532e-101
Identity = 176/186 (94.62%), Postives = 181/186 (97.31%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISA KAYH QLSV EITN+ FEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAK AFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  163 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKLAFVHWYVGEGMEEGEFSEAREDLAALEKDY 348
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 367.081 bits (941), Expect = 3.307e-101
Identity = 179/186 (96.24%), Postives = 182/186 (97.85%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVDVTEFQTNLVPYPRIHFMLSS APVISAEKAYH QLSVAEITNSAFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP GDLAKV RAVCMISNST++AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 ALNVDVTEFQTNLVPYPRIHFMLSS-APVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 431
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 2.800e-100
Identity = 172/186 (92.47%), Postives = 182/186 (97.85%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHFMLSSYAP+ISAEKAYH QLSVAEITNSAFEP++MMAKCDPRHGKYMAC +MYRGDVVPKDVNA++ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  247 ALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 3.657e-100
Identity = 171/186 (91.94%), Postives = 181/186 (97.31%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHFMLSSYAP+ISAEKAYH QLSVAEITN+AFEP+SMM KCDP HGKYMACCLMYRGDVVPKDVNA+VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG DLAKVQRAVCMISNST++ E+FSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD+
Sbjct:  247 ALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPLHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGVDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDF 432
[Close]
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 6.237e-100
Identity = 171/186 (91.94%), Postives = 182/186 (97.85%), Query Frame = 1 
Query:    1 ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            ALNVD+TEFQTNLVPYPRIHFML+SYAPVISAEKA+H QLSVAE+TN+ F+PSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVA IKTKRTIQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRA+CMISN+T++AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE EFSEAREDLAALEKDY
Sbjct:  247 ALNVDITEFQTNLVPYPRIHFMLASYAPVISAEKAFHEQLSVAELTNTVFDPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAVIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEVEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
BLAST of CX288978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
TBA_PLAYO5.102e-10294.62Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBA_PLAFK5.102e-10294.62Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBA1_CHLRE5.102e-10293.01Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii... [more]
TBA3_ARATH1.939e-10193.55Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBAD_PHYPO2.532e-10193.01Tubulin alpha-1A chain OS=Physarum polycephalum GN... [more]
TBA2_ANEPH2.532e-10194.62Tubulin alpha-2 chain (Fragment) OS=Anemia phyllit... [more]
TBA2_STYLE3.307e-10196.24Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA_TETTH2.800e-10092.47Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBA2_CHLRE3.657e-10091.94Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii... [more]
TBAE_PHYPO6.237e-10091.94Tubulin alpha-2B chain OS=Physarum polycephalum GN... [more]

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Properties
Property NameValue
Genbank descriptionC02007F02SK IF1 Citrus clementina cDNA clone C02007F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288978 ID=CX288978; Name=CX288978; organism=Citrus clementina; type=EST; length=558bp
GCTTTGAATGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCC
AAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGA
AGGCCTACCATTAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTT
GAGCCCTCATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACAT
GGCTTGCTGCCTCATGTACCGTGGTGATGTTGTGCCCAAGGATGTCAATG
CAGCTGTTGCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGG
TGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGCCACCAACTGTTGT
TCCTGGTGGTGACCTTGCCAAGGTGCAGAGGGCTGTTTGCATGATCTCCA
ACTCCACCAGTGTGGCAGAGGTGTTCTCTCGCATTGACCACAAGTTTGAT
CTTATGTATGCAAAGCGTGCTTTCGTCCACTGGTATGTTGGCGAGGGTAT
GGAAGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTTGCTGCCCTTGAGA
AGGATTAT
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