CX288978

Overview
NameCX288978
Unique NameCX288978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.091e-11
Identity = 43/175 (24.57%), Postives = 84/175 (48.00%), Query Frame = 1
Query:   34 NLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558
            +L P    HF+++SY P+    +    + S  ++     +P ++MA+   + GKY++ C  ++GDV   ++N A+     +R  +FV W     K       P V  G  ++ +     +++N+TS+   F  I   FD M+ KR ++        +  EF E++E +  + ++Y
Sbjct:  254 HLCPSRFSHFLMTSYTPLRQVNQISS-RTSAIDVMKRLIQPQNIMARTRLKEGKYISMCDFFQGDVSYDEINEALQRFTDRRLAEFVPWNKEAIKVVHTRVSPLVKRGNRMSGM-----LLANNTSIRYYFQDILKAFDQMFKKRVYLQTDRDNLRKFPEFEESKEIVKCVIEEY 422          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.091e-11
Identity = 43/195 (22.05%), Postives = 99/195 (50.77%), Query Frame = 1
Query:    4 LNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRH-----GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY----VGEGMEEGEFSEAREDLAALEKDY 558
            +N D+     +L+P PR HF+++ Y P+ +  +     + +V ++     +  ++M     R+      KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +  ++ + P V     ++ +     M++N TS+  +FS+   +++ +  K+AF+  Y    + E  +  EF E+RE + +L  +Y
Sbjct:  249 MNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTTHRVSGL-----MLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFEDNDLSEFDESREIIESLVDEY 438          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.431e-11
Identity = 43/195 (22.05%), Postives = 96/195 (49.23%), Query Frame = 1
Query:    4 LNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDY 558
            +N D+     +L+P PR HF+++ Y P+ +  +     + +V ++     +  ++M     R       KY++   + +G+V P  V+ ++  I+ ++ + F+DW P   +  ++ + P V     ++ +     M++N TS+  +F +   +++ +  K+AF+  Y    M    +  EF E+RE + +L  +Y
Sbjct:  249 MNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNVMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWAPASIQVALSRKSPYVQTTHRVSGL-----MLANHTSIRHLFGKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLVDEY 438          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.147e-11
Identity = 43/195 (22.05%), Postives = 98/195 (50.26%), Query Frame = 1
Query:    4 LNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA-YH*QLSVAEITNSAFEPSSMMAKCDPRH-----GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDY 558
            +N D+     +L+P PR HF+++ Y P+    +A    + +V ++     +  ++M     R+      KY++   + +G+V P  V+ ++  I+ ++ + F++W P   +  ++ + P V     ++ +     M+++ TS+  +FS+   ++D +  K+AF+  Y    M    +  EF E+R+ + +L  +Y
Sbjct:  249 MNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEY 438          
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 43/195 (22.05%), Postives = 96/195 (49.23%), Query Frame = 1
Query:    4 LNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDY 558
            +N D+     +L+P PR HF+++ Y P+ +  +     + +V ++     +  ++M     R       KY++   + +G+V P  V+ ++  I+ ++ + F+ W P   +  ++ + P V     ++ +     M++N TS+  +FS+   +++ +  K+AF+  Y    M    +  EF E+RE + +L  +Y
Sbjct:  249 MNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIYWAPASIQVALSRKSPYVQTTHRVSGL-----MLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLVDEY 438          
The following BLAST results are available for this feature:
BLAST of CX288978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
TBG_ENTHI1.091e-1124.57Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBG2_ORYSJ1.091e-1122.05Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]
TBG2_MAIZE2.431e-1122.05Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]
TBG1_ARATH4.147e-1122.05Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBG1_MAIZE9.239e-1122.05Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC02007F02SK IF1 Citrus clementina cDNA clone C02007F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288978 ID=CX288978; Name=CX288978; organism=Citrus clementina; type=EST; length=558bp
GCTTTGAATGTGGATGTGACTGAATTCCAAACCAACTTGGTCCCATACCC
AAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTCATCTCAGCTGAGA
AGGCCTACCATTAACAACTCTCAGTTGCTGAGATCACCAACAGTGCCTTT
GAGCCCTCATCTATGATGGCCAAATGTGATCCTCGTCATGGCAAGTACAT
GGCTTGCTGCCTCATGTACCGTGGTGATGTTGTGCCCAAGGATGTCAATG
CAGCTGTTGCTACCATCAAGACCAAGCGTACAATCCAATTCGTCGACTGG
TGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGCCACCAACTGTTGT
TCCTGGTGGTGACCTTGCCAAGGTGCAGAGGGCTGTTTGCATGATCTCCA
ACTCCACCAGTGTGGCAGAGGTGTTCTCTCGCATTGACCACAAGTTTGAT
CTTATGTATGCAAAGCGTGCTTTCGTCCACTGGTATGTTGGCGAGGGTAT
GGAAGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTTGCTGCCCTTGAGA
AGGATTAT
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