CX288978
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.091e-11 Identity = 43/175 (24.57%), Postives = 84/175 (48.00%), Query Frame = 1 Query: 34 NLVPYPRIHFMLSSYAPVISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 558 +L P HF+++SY P+ + + S ++ +P ++MA+ + GKY++ C ++GDV ++N A+ +R +FV W K P V G ++ + +++N+TS+ F I FD M+ KR ++ + EF E++E + + ++Y Sbjct: 254 HLCPSRFSHFLMTSYTPLRQVNQISS-RTSAIDVMKRLIQPQNIMARTRLKEGKYISMCDFFQGDVSYDEINEALQRFTDRRLAEFVPWNKEAIKVVHTRVSPLVKRGNRMSGM-----LLANNTSIRYYFQDILKAFDQMFKKRVYLQTDRDNLRKFPEFEESKEIVKCVIEEY 422
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.091e-11 Identity = 43/195 (22.05%), Postives = 99/195 (50.77%), Query Frame = 1 Query: 4 LNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPRH-----GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY----VGEGMEEGEFSEAREDLAALEKDY 558 +N D+ +L+P PR HF+++ Y P+ + + + +V ++ + ++M R+ KY++ + +G+V P V+ ++ I+ ++ + F++W P + ++ + P V ++ + M++N TS+ +FS+ +++ + K+AF+ Y + E + EF E+RE + +L +Y Sbjct: 249 MNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTTHRVSGL-----MLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFEDNDLSEFDESREIIESLVDEY 438
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.431e-11 Identity = 43/195 (22.05%), Postives = 96/195 (49.23%), Query Frame = 1 Query: 4 LNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDY 558 +N D+ +L+P PR HF+++ Y P+ + + + +V ++ + ++M R KY++ + +G+V P V+ ++ I+ ++ + F+DW P + ++ + P V ++ + M++N TS+ +F + +++ + K+AF+ Y M + EF E+RE + +L +Y Sbjct: 249 MNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNVMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWAPASIQVALSRKSPYVQTTHRVSGL-----MLANHTSIRHLFGKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLVDEY 438
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.147e-11 Identity = 43/195 (22.05%), Postives = 98/195 (50.26%), Query Frame = 1 Query: 4 LNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA-YH*QLSVAEITNSAFEPSSMMAKCDPRH-----GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDY 558 +N D+ +L+P PR HF+++ Y P+ +A + +V ++ + ++M R+ KY++ + +G+V P V+ ++ I+ ++ + F++W P + ++ + P V ++ + M+++ TS+ +FS+ ++D + K+AF+ Y M + EF E+R+ + +L +Y Sbjct: 249 MNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEY 438
BLAST of CX288978 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11 Identity = 43/195 (22.05%), Postives = 96/195 (49.23%), Query Frame = 1 Query: 4 LNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYH*QLSVAEITNSAFEPSSMMAKCDPR-----HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDY 558 +N D+ +L+P PR HF+++ Y P+ + + + +V ++ + ++M R KY++ + +G+V P V+ ++ I+ ++ + F+ W P + ++ + P V ++ + M++N TS+ +FS+ +++ + K+AF+ Y M + EF E+RE + +L +Y Sbjct: 249 MNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIYWAPASIQVALSRKSPYVQTTHRVSGL-----MLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLVDEY 438 The following BLAST results are available for this feature:
BLAST of CX288978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 395
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288978 ID=CX288978; Name=CX288978; organism=Citrus clementina; type=EST; length=558bpback to top |