CX288980

Overview
NameCX288980
Unique NameCX288980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288980_ssr66 microsatellite CX288980_ssr66:66..77. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig165 contig Ccv1_Contig165:8..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KCY_PIG (UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.259e-23
Identity = 54/90 (60.00%), Postives = 70/90 (77.78%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNE 469
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GKIVP E+TI LL++ M++     +  +KFLIDGFPRN+
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQ 98          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KCY_BOVIN (UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 5.259e-23
Identity = 54/90 (60.00%), Postives = 70/90 (77.78%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNE 469
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GKIVP E+TI LL++ M++     +  +KFLIDGFPRN+
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQ 98          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: UMPK_YEAST (Uridylate kinase OS=Saccharomyces cerevisiae GN=URA6 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.428e-21
Identity = 49/86 (56.98%), Postives = 66/86 (76.74%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPR 463
            LGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG+IVP E+T+ LL+ A+ +   +   KFLIDGFPR
Sbjct:   22 LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPR 107          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD1_RAT (Adenylate kinase isoenzyme 1 OS=Rattus norvegicus GN=Ak1 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.097e-20
Identity = 45/84 (53.57%), Postives = 64/84 (76.19%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPR 463
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+ +++++G++VP E  + +L+ AM  +   ++ FLIDG+PR
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSSRGKMLSSIMEKGELVPLETVLDMLRDAMLAKVDSSNGFLIDGYPR 97          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD1_PIG (Adenylate kinase isoenzyme 1 OS=Sus scrofa GN=AK1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.442e-20
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPR 463
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G++VP E  + +L+ AM  +   +  FLIDG+PR
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPR 97          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD1_BOVIN (Adenylate kinase isoenzyme 1 OS=Bos taurus GN=AK1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 5.442e-20
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPR 463
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G++VP E  + +L+ AM  +   +  FLIDG+PR
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPR 97          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD1_MOUSE (Adenylate kinase isoenzyme 1 OS=Mus musculus GN=Ak1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.107e-20
Identity = 44/84 (52.38%), Postives = 63/84 (75.00%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPR 463
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGSE G  +  ++++G++VP +  + +L+ AM  +   ++ FLIDG+PR
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSERGKKLSAIMEKGELVPLDTVLDMLRDAMLAKVDSSNGFLIDGYPR 97          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD1_CYPCA (Adenylate kinase isoenzyme 1 OS=Cyprinus carpio GN=ak1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 7.107e-20
Identity = 44/84 (52.38%), Postives = 64/84 (76.19%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPR 463
            +GGPGSGKGTQC  IVE +GYTHLS+GDLLRAE+ SGSE G  +Q ++++G++VP +  + +++ AM  +   +  +LIDG+PR
Sbjct:   14 VGGPGSGKGTQCEKIVEKYGYTHLSSGDLLRAEVASGSERGKQLQAIMQKGELVPLDTVLDMIKDAMIAKADVSKGYLIDGYPR 97          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD1_CHICK (Adenylate kinase isoenzyme 1 OS=Gallus gallus GN=AK1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.107e-20
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPR 463
            +GGPGSGKGTQC  IV  +GYTHLS GDLLRAE+ SGSE G  +Q ++++G++VP +  + +L+ AM  +   +  FLIDG+PR
Sbjct:   15 VGGPGSGKGTQCEKIVHKYGYTHLSTGDLLRAEVSSGSERGKKLQAIMEKGELVPLDTVLDMLRDAMLAKADTSKGFLIDGYPR 98          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD1_HUMAN (Adenylate kinase isoenzyme 1 OS=Homo sapiens GN=AK1 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 2.068e-19
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPR 463
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLR+E+ SGS  G  +  ++++G++VP E  + +L+ AM    N    FLIDG+PR
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNTSKGFLIDGYPR 97          
The following BLAST results are available for this feature:
BLAST of CX288980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KCY_PIG5.259e-2360.00UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1[more]
KCY_BOVIN5.259e-2360.00UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2[more]
UMPK_YEAST6.428e-2156.98Uridylate kinase OS=Saccharomyces cerevisiae GN=UR... [more]
KAD1_RAT1.097e-2053.57Adenylate kinase isoenzyme 1 OS=Rattus norvegicus ... [more]
KAD1_PIG5.442e-2053.57Adenylate kinase isoenzyme 1 OS=Sus scrofa GN=AK1 ... [more]
KAD1_BOVIN5.442e-2053.57Adenylate kinase isoenzyme 1 OS=Bos taurus GN=AK1 ... [more]
KAD1_MOUSE7.107e-2052.38Adenylate kinase isoenzyme 1 OS=Mus musculus GN=Ak... [more]
KAD1_CYPCA7.107e-2052.38Adenylate kinase isoenzyme 1 OS=Cyprinus carpio GN... [more]
KAD1_CHICK7.107e-2053.57Adenylate kinase isoenzyme 1 OS=Gallus gallus GN=A... [more]
KAD1_HUMAN2.068e-1952.38Adenylate kinase isoenzyme 1 OS=Homo sapiens GN=AK... [more]

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Properties
Property NameValue
Genbank descriptionC02007F04SK IF1 Citrus clementina cDNA clone C02007F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288980 ID=CX288980; Name=CX288980; organism=Citrus clementina; type=EST; length=469bp
CTGCAGGAAAAAACTAACATTGGCAATTGGCATCCCTCTGCCTTCTTTCT
TTCCCTCCATATTCTTCTCTCTCTCTCCAAACAAAACAACGCTCGCAATT
CGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCTGATGGGAACTGT
GGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAACTGTGAAGAAGC
CCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGCGGAAAAGGAACCCAG
TGCGCAAACATTGTTGAACACTTTGGATACACCCATCTCAGTGCTGGCGA
TCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATGGAACCATGATTC
AGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAGGTCACAATTAAG
CTTCTTCAAAAAGCAATGGAGGAAAGTGGAAATGATAAATTTCTCATTGA
TGGTTTTCCCAGAAACGAG
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