CX288980

Overview
NameCX288980
Unique NameCX288980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_SERP5 (Adenylate kinase OS=Serratia proteamaculans (strain 568) GN=adk PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +K+GSE G   + ++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAGSELGKQAKEIMDAGKLVTDELVIALVKERITQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_MANSM (Adenylate kinase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=adk PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+  FG   +S GD+ RA IK+G+E G   + ++ EGK+VP E+T+ L++ +  +    + FL+DGFPR
Sbjct:   10 LGAPGAGKGTQAQFIMNKFGIPQISTGDMFRAAIKAGTELGKQAKALMDEGKLVPDELTVALVKDRIAQPDCANGFLLDGFPR 92          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_GIALA (Adenylate kinase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 33/84 (39.29%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNE 469
            LG PG+GKGTQ  ++V  +   H+S G+LLR E+   S     I++ + +G++VP  + IKL++  +   G+  +L+DGFPR+E
Sbjct:   33 LGAPGAGKGTQAKHLVSKYSLKHISPGNLLREEMNRNSPITAQIKDYVSKGQLVPDSIVIKLIENHIATIGDSNWLLDGFPRSE 116          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_GEOSW (Adenylate kinase OS=Geobacillus sp. (strain WCH70) GN=adk PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPR 463
            +G PG+GKGTQ   IVE +G  H+S GD+ RA IK G+  G   +  +  G +VP EVTI ++++ + +    K FL+DGFPR
Sbjct:    6 MGLPGAGKGTQAEKIVETYGIPHISTGDMFRAAIKEGTPLGLQAKEYMDRGDLVPDEVTIGIVRERLSKDDCQKGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_ECO45 (Adenylate kinase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=adk PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E     FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRYGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_CAMC1 (Adenylate kinase OS=Campylobacter concisus (strain 13826) GN=adk PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRN 466
            +G PGSGK T  + I +H   + H S GDLLRAE+ SGSE G +I   I +G +VP +V +  +  A++ S     +IDG+PR+
Sbjct:    8 IGAPGSGKTTDASLIAQHDEKFAHFSTGDLLRAEVASGSELGKLIDGFISKGNLVPLDVVVNAIVSAIKSSNKSNIIIDGYPRS 91          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_STRPZ (Adenylate kinase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=adk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLIDGFPR 463
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E G + ++ I +G++VP EVT  ++++ + E       FL+DG+PR
Sbjct:    6 IGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPR 89          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_STRPM (Adenylate kinase OS=Streptococcus pyogenes serotype M28 GN=adk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLIDGFPR 463
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E G + ++ I +G++VP EVT  ++++ + E       FL+DG+PR
Sbjct:    6 IGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPR 89          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_STRPG (Adenylate kinase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=adk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLIDGFPR 463
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E G + ++ I +G++VP EVT  ++++ + E       FL+DG+PR
Sbjct:    6 MGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPR 89          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_STRPF (Adenylate kinase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=adk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLIDGFPR 463
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E G + ++ I +G++VP EVT  ++++ + E       FL+DG+PR
Sbjct:    6 MGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPR 89          
The following BLAST results are available for this feature:
BLAST of CX288980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_SERP57.611e-1444.58Adenylate kinase OS=Serratia proteamaculans (strai... [more]
KAD_MANSM7.611e-1444.58Adenylate kinase OS=Mannheimia succiniciproducens ... [more]
KAD_GIALA7.611e-1439.29Adenylate kinase OS=Giardia lamblia PE=3 SV=1[more]
KAD_GEOSW7.611e-1444.58Adenylate kinase OS=Geobacillus sp. (strain WCH70)... [more]
KAD_ECO457.611e-1445.78Adenylate kinase OS=Escherichia coli O45:K1 (strai... [more]
KAD_CAMC17.611e-1442.86Adenylate kinase OS=Campylobacter concisus (strain... [more]
KAD_STRPZ9.941e-1442.86Adenylate kinase OS=Streptococcus pyogenes serotyp... [more]
KAD_STRPM9.941e-1442.86Adenylate kinase OS=Streptococcus pyogenes serotyp... [more]
KAD_STRPG9.941e-1442.86Adenylate kinase OS=Streptococcus pyogenes serotyp... [more]
KAD_STRPF9.941e-1442.86Adenylate kinase OS=Streptococcus pyogenes serotyp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02007F04SK IF1 Citrus clementina cDNA clone C02007F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288980 ID=CX288980; Name=CX288980; organism=Citrus clementina; type=EST; length=469bp
CTGCAGGAAAAAACTAACATTGGCAATTGGCATCCCTCTGCCTTCTTTCT
TTCCCTCCATATTCTTCTCTCTCTCTCCAAACAAAACAACGCTCGCAATT
CGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCTGATGGGAACTGT
GGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAACTGTGAAGAAGC
CCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGCGGAAAAGGAACCCAG
TGCGCAAACATTGTTGAACACTTTGGATACACCCATCTCAGTGCTGGCGA
TCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATGGAACCATGATTC
AGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAGGTCACAATTAAG
CTTCTTCAAAAAGCAATGGAGGAAAGTGGAAATGATAAATTTCTCATTGA
TGGTTTTCCCAGAAACGAG
back to top