CX288980

Overview
NameCX288980
Unique NameCX288980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288980_ssr66 microsatellite CX288980_ssr66:66..77. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig165 contig Ccv1_Contig165:8..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD1_RABIT (Adenylate kinase isoenzyme 1 OS=Oryctolagus cuniculus GN=AK1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.701e-19
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPR 463
            +GGPGSGKGTQC  IV  +GYTHLS GDLLRAE+ SGS  G  +  ++++G++VP E  + +L+ AM    +    FLIDG+PR
Sbjct:   14 VGGPGSGKGTQCEKIVHKYGYTHLSTGDLLRAEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKADTSKGFLIDGYPR 97          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD5_MOUSE (Adenylate kinase isoenzyme 5 OS=Mus musculus GN=Ak5 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.527e-19
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDK-FLIDGFPR 463
            +GGPGSGKGTQC  + E +G+THLS G+LLR E+ S SE   +I+++++ G +VPS V ++LL++AM  S GN K FLIDG+PR
Sbjct:  382 MGGPGSGKGTQCEKLAEKYGFTHLSTGELLRQELTSESERSKLIRDIMERGDLVPSGVVLELLKEAMVASLGNTKGFLIDGYPR 465          

HSP 2 Score: 75.0998 bits (183), Expect = 1.696e-13
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN--GTMIQNMIKEGKIVPSEVTI-KLLQKAMEESGNDKFLIDGFPRN 466
            +GGPGSGKGTQ   I E +G+ ++S G+LLR +I S S N   ++I  +I  G++ P E TI ++ QK M+    +  +IDGFPR+
Sbjct:  138 IGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSASSNRKWSLIAKIITNGELAPQETTITEIKQKLMQIPDEEGIVIDGFPRD 223          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD1_CAEEL (Probable adenylate kinase isoenzyme F38B2.4 OS=Caenorhabditis elegans GN=F38B2.4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.527e-19
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM---EESGNDKFLIDGFPR 463
            +GGPGSGKGTQC  IV  +G THLS+GDLLR E+KSGS  G  +  +++ G +VP EV + L+++AM    E G+  FLIDG+PR
Sbjct:   26 VGGPGSGKGTQCDKIVAKYGLTHLSSGDLLRDEVKSGSPRGAQLTAIMESGALVPLEVVLDLVKEAMLKAIEKGSKGFLIDGYPR 110          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: UMPK_SCHPO (Probable uridylate kinase OS=Schizosaccharomyces pombe GN=SPCC1795.05c PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.607e-19
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPR 463
            LGGPG+GKGTQC  + E F  + H+SAGD LR E  + GS+ G +I+  IK+GKIVP E+TI LL+  M+E    G DKFLIDGFPR
Sbjct:    8 LGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIVPMEITISLLETKMKECHDKGIDKFLIDGFPR 94          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD5_HUMAN (Adenylate kinase isoenzyme 5 OS=Homo sapiens GN=AK5 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 4.607e-19
Identity = 44/84 (52.38%), Postives = 63/84 (75.00%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPR 463
            +GGPGSGKGTQC  +VE +G+THLS G+LLR E+ S SE   +I+++++ G +VPS + ++LL++AM  S  D   FLIDG+PR
Sbjct:  382 IGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDTRGFLIDGYPR 465          

HSP 2 Score: 73.9442 bits (180), Expect = 3.777e-13
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN--GTMIQNMIKEGKIVPSEVTI-KLLQKAMEESGNDKFLIDGFPRN 466
            +GGPGSGKGTQ   I E +G+ ++S G+LLR +I S S N   ++I  +I  G++ P E TI ++ QK M+    +  +IDGFPR+
Sbjct:  138 IGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSTSSNRKWSLIAKIITTGELAPQETTITEIKQKLMQIPDEEGIVIDGFPRD 223          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD5_BOVIN (Adenylate kinase isoenzyme 5 OS=Bos taurus GN=Ak5 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.639e-16
Identity = 41/84 (48.81%), Postives = 62/84 (73.81%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDK-FLIDGFPR 463
            +GGPGSGKGTQC  + E +G+THLS  +LL+ E+ S S    +I+++++ G++VPS + ++LL++AM  S  N K FLIDG+PR
Sbjct:  382 IGGPGSGKGTQCGKLAEKYGFTHLSTDELLQNELSSESGRSKLIRDIMERGELVPSGIILELLKEAMVASLSNTKGFLIDGYPR 465          

HSP 2 Score: 72.4034 bits (176), Expect = 1.099e-12
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN--GTMIQNMIKEGKIVPSEVTI-KLLQKAMEESGNDKFLIDGFPRN 466
            +GGPGSGKGTQ   I E +G+ ++S G+LLR +I S S N   ++I  +I  G++ P E TI ++ QK M+       +IDGFPR+
Sbjct:  138 IGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSTSSNRKWSLIAKIITTGELAPQETTITEIKQKLMQMPDEVGIVIDGFPRD 223          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_SCHMA (Adenylate kinase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.140e-16
Identity = 38/67 (56.72%), Postives = 53/67 (79.10%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM 418
            LGGPGSGKGTQC  +V+ F + HLS+GDLLRAE++SGS  G  ++ M++ G++VP EV + LL++AM
Sbjct:   15 LGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAM 81          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KADC2_ARATH (Probable adenylate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g47840 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.795e-16
Identity = 37/84 (44.05%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  221 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRN 466
            G P SGKGTQC  I   +G  H+SAGDLLRAEI SGSENG   +  +++G++VP E+ + +++  + ++ +++  +L+DG+PR+
Sbjct:   71 GAPASGKGTQCELITHKYGLVHISAGDLLRAEIASGSENGRRAKEHMEKGQLVPDEIVVMMVKDRLSQTDSEQKGWLLDGYPRS 154          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_STRMU (Adenylate kinase OS=Streptococcus mutans GN=adk PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.366e-15
Identity = 39/84 (46.43%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPR 463
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E GT+ ++ I +G++VP EVT  ++++ + ES   K  FL+DG+PR
Sbjct:    6 MGLPGAGKGTQAAKIVEKFGLAHISTGDMFRAAMANQTEMGTLAKSFIDKGELVPDEVTNGIVKERLSESDITKKGFLLDGYPR 89          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_ENTHI (Adenylate kinase OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 36/83 (43.37%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYT-HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPR 463
            LGGPG+GKGTQCANI +H   + H+S GDLLRAEIK+ +E G  ++++I+ G++V  E+   ++   + ++  +  + DG+PR
Sbjct:    9 LGGPGAGKGTQCANIEKHLNSSAHISTGDLLRAEIKNKTEIGLKVEDIIRNGQLVSDEIICNMVNNFIAKNEKEVIVFDGYPR 91          
The following BLAST results are available for this feature:
BLAST of CX288980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD1_RABIT2.701e-1952.38Adenylate kinase isoenzyme 1 OS=Oryctolagus cunicu... [more]
KAD5_MOUSE3.527e-1954.76Adenylate kinase isoenzyme 5 OS=Mus musculus GN=Ak... [more]
KAD1_CAEEL3.527e-1954.12Probable adenylate kinase isoenzyme F38B2.4 OS=Cae... [more]
UMPK_SCHPO4.607e-1957.47Probable uridylate kinase OS=Schizosaccharomyces p... [more]
KAD5_HUMAN4.607e-1952.38Adenylate kinase isoenzyme 5 OS=Homo sapiens GN=AK... [more]
KAD5_BOVIN1.639e-1648.81Adenylate kinase isoenzyme 5 OS=Bos taurus GN=Ak5 ... [more]
KAD_SCHMA2.140e-1656.72Adenylate kinase OS=Schistosoma mansoni PE=2 SV=1[more]
KADC2_ARATH2.795e-1644.05Probable adenylate kinase 2, chloroplastic OS=Arab... [more]
KAD_STRMU2.366e-1546.43Adenylate kinase OS=Streptococcus mutans GN=adk PE... [more]
KAD_ENTHI4.036e-1543.37Adenylate kinase OS=Entamoeba histolytica PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC02007F04SK IF1 Citrus clementina cDNA clone C02007F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288980 ID=CX288980; Name=CX288980; organism=Citrus clementina; type=EST; length=469bp
CTGCAGGAAAAAACTAACATTGGCAATTGGCATCCCTCTGCCTTCTTTCT
TTCCCTCCATATTCTTCTCTCTCTCTCCAAACAAAACAACGCTCGCAATT
CGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCTGATGGGAACTGT
GGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAACTGTGAAGAAGC
CCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGCGGAAAAGGAACCCAG
TGCGCAAACATTGTTGAACACTTTGGATACACCCATCTCAGTGCTGGCGA
TCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATGGAACCATGATTC
AGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAGGTCACAATTAAG
CTTCTTCAAAAAGCAATGGAGGAAAGTGGAAATGATAAATTTCTCATTGA
TGGTTTTCCCAGAAACGAG
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