CX288980

Overview
NameCX288980
Unique NameCX288980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_YERPA (Adenylate kinase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +K+GSE G   + ++  GK+V  E+ I L+ ++  +E   D FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAGSELGLKAKEIMDAGKLVTDELVIALVKERITQEDCRDGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_YERP3 (Adenylate kinase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +K+GSE G   + ++  GK+V  E+ I L+ ++  +E   D FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAGSELGLKAKEIMDAGKLVTDELVIALVKERITQEDCRDGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_STRT2 (Adenylate kinase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 37/84 (44.05%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLIDGFPR 463
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E G + ++ I +G++VP EVT  ++++ + ES      FL+DG+PR
Sbjct:    6 MGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSFIDKGELVPDEVTNGIVKERLAESDIAEKGFLLDGYPR 89          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_STRT1 (Adenylate kinase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 37/84 (44.05%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLIDGFPR 463
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E G + ++ I +G++VP EVT  ++++ + ES      FL+DG+PR
Sbjct:    6 MGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSFIDKGELVPDEVTNGIVKERLAESDIAEKGFLLDGYPR 89          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_SHISS (Adenylate kinase OS=Shigella sonnei (strain Ss046) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_SHIFL (Adenylate kinase OS=Shigella flexneri GN=adk PE=3 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_SHIF8 (Adenylate kinase OS=Shigella flexneri serotype 5b (strain 8401) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_SHIBS (Adenylate kinase OS=Shigella boydii serotype 4 (strain Sb227) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_SHIB3 (Adenylate kinase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_SALTY (Adenylate kinase OS=Salmonella typhimurium GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
The following BLAST results are available for this feature:
BLAST of CX288980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_YERPA2.616e-1445.78Adenylate kinase OS=Yersinia pestis bv. Antiqua (s... [more]
KAD_YERP32.616e-1445.78Adenylate kinase OS=Yersinia pseudotuberculosis se... [more]
KAD_STRT22.616e-1444.05Adenylate kinase OS=Streptococcus thermophilus (st... [more]
KAD_STRT12.616e-1444.05Adenylate kinase OS=Streptococcus thermophilus (st... [more]
KAD_SHISS2.616e-1445.78Adenylate kinase OS=Shigella sonnei (strain Ss046)... [more]
KAD_SHIFL2.616e-1445.78Adenylate kinase OS=Shigella flexneri GN=adk PE=3 ... [more]
KAD_SHIF82.616e-1445.78Adenylate kinase OS=Shigella flexneri serotype 5b ... [more]
KAD_SHIBS2.616e-1445.78Adenylate kinase OS=Shigella boydii serotype 4 (st... [more]
KAD_SHIB32.616e-1445.78Adenylate kinase OS=Shigella boydii serotype 18 (s... [more]
KAD_SALTY2.616e-1445.78Adenylate kinase OS=Salmonella typhimurium GN=adk ... [more]

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Properties
Property NameValue
Genbank descriptionC02007F04SK IF1 Citrus clementina cDNA clone C02007F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288980 ID=CX288980; Name=CX288980; organism=Citrus clementina; type=EST; length=469bp
CTGCAGGAAAAAACTAACATTGGCAATTGGCATCCCTCTGCCTTCTTTCT
TTCCCTCCATATTCTTCTCTCTCTCTCCAAACAAAACAACGCTCGCAATT
CGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCTGATGGGAACTGT
GGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAACTGTGAAGAAGC
CCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGCGGAAAAGGAACCCAG
TGCGCAAACATTGTTGAACACTTTGGATACACCCATCTCAGTGCTGGCGA
TCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATGGAACCATGATTC
AGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAGGTCACAATTAAG
CTTCTTCAAAAAGCAATGGAGGAAAGTGGAAATGATAAATTTCTCATTGA
TGGTTTTCCCAGAAACGAG
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