CX288980

Overview
NameCX288980
Unique NameCX288980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288980_ssr66 microsatellite CX288980_ssr66:66..77. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig165 contig Ccv1_Contig165:8..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_SALCH (Adenylate kinase OS=Salmonella choleraesuis GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_SALA4 (Adenylate kinase OS=Salmonella agona (strain SL483) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_LYSSC (Adenylate kinase OS=Lysinibacillus sphaericus (strain C3-41) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPR 463
            +G PG+GKGTQ   IVE +   H+S GD+ RA IK G+E G   ++ + +G +VP EVTI ++++ + +   +K FL+DGFPR
Sbjct:    6 MGLPGAGKGTQADKIVEKYAIPHISTGDMFRAAIKEGTELGLQAKSFMDQGALVPDEVTIGIVRERLAKPDCEKGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_KLEP7 (Adenylate kinase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_KLEP3 (Adenylate kinase OS=Klebsiella pneumoniae (strain 342) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_HAEIN (Adenylate kinase OS=Haemophilus influenzae GN=adk PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPR 463
            LG PG+GKGTQ   I+  FG   +S GD+ RA IK+G+E G   + ++ EGK+VP E+T+ L++  + ++   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMNKFGIPQISTGDMFRAAIKAGTELGKQAKALMDEGKLVPDELTVALVKDRIAQADCTNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_HAEIG (Adenylate kinase OS=Haemophilus influenzae (strain PittGG) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPR 463
            LG PG+GKGTQ   I+  FG   +S GD+ RA IK+G+E G   + ++ EGK+VP E+T+ L++  + ++   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMNKFGIPQISTGDMFRAAIKAGTELGKQAKALMDEGKLVPDELTVALVKDRIAQADCTNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_HAEI8 (Adenylate kinase OS=Haemophilus influenzae (strain 86-028NP) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPR 463
            LG PG+GKGTQ   I+  FG   +S GD+ RA IK+G+E G   + ++ EGK+VP E+T+ L++  + ++   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMNKFGIPQISTGDMFRAAIKAGTELGKQAKALMDEGKLVPDELTVALVKDRIAQADCTNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_ESCF3 (Adenylate kinase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_ECOSM (Adenylate kinase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
The following BLAST results are available for this feature:
BLAST of CX288980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_SALCH2.616e-1445.78Adenylate kinase OS=Salmonella choleraesuis GN=adk... [more]
KAD_SALA42.616e-1445.78Adenylate kinase OS=Salmonella agona (strain SL483... [more]
KAD_LYSSC2.616e-1444.58Adenylate kinase OS=Lysinibacillus sphaericus (str... [more]
KAD_KLEP72.616e-1445.78Adenylate kinase OS=Klebsiella pneumoniae subsp. p... [more]
KAD_KLEP32.616e-1445.78Adenylate kinase OS=Klebsiella pneumoniae (strain ... [more]
KAD_HAEIN2.616e-1444.58Adenylate kinase OS=Haemophilus influenzae GN=adk ... [more]
KAD_HAEIG2.616e-1444.58Adenylate kinase OS=Haemophilus influenzae (strain... [more]
KAD_HAEI82.616e-1444.58Adenylate kinase OS=Haemophilus influenzae (strain... [more]
KAD_ESCF32.616e-1445.78Adenylate kinase OS=Escherichia fergusonii (strain... [more]
KAD_ECOSM2.616e-1445.78Adenylate kinase OS=Escherichia coli (strain SMS-3... [more]

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Properties
Property NameValue
Genbank descriptionC02007F04SK IF1 Citrus clementina cDNA clone C02007F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288980 ID=CX288980; Name=CX288980; organism=Citrus clementina; type=EST; length=469bp
CTGCAGGAAAAAACTAACATTGGCAATTGGCATCCCTCTGCCTTCTTTCT
TTCCCTCCATATTCTTCTCTCTCTCTCCAAACAAAACAACGCTCGCAATT
CGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCTGATGGGAACTGT
GGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAACTGTGAAGAAGC
CCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGCGGAAAAGGAACCCAG
TGCGCAAACATTGTTGAACACTTTGGATACACCCATCTCAGTGCTGGCGA
TCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATGGAACCATGATTC
AGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAGGTCACAATTAAG
CTTCTTCAAAAAGCAATGGAGGAAAGTGGAAATGATAAATTTCTCATTGA
TGGTTTTCCCAGAAACGAG
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