CX288980

Overview
NameCX288980
Unique NameCX288980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_ECO7I (Adenylate kinase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_ECO57 (Adenylate kinase OS=Escherichia coli O157:H7 GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_ECO55 (Adenylate kinase OS=Escherichia coli (strain 55989 / EAEC) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_ECO27 (Adenylate kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_ECO24 (Adenylate kinase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=adk PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_SHIDS (Adenylate kinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=adk PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L++ +  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKGRIAQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD_ENT38 (Adenylate kinase OS=Enterobacter sp. (strain 638) GN=adk PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPR 463
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKKAKDIMDAGKLVTDELVIALVKERITQEDCRNGFLLDGFPR 88          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD4_RAT (Adenylate kinase isoenzyme 4, mitochondrial OS=Rattus norvegicus GN=Ak3l1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPR 463
            LG PGSGKGT C  I ++FG  HLS+G LLR  +K+ +E G + +  +++G +VP  V  +L+   +E      +L+DGFPR
Sbjct:   11 LGPPGSGKGTVCERIAQNFGLQHLSSGHLLRENLKTNTEVGDVAKQYLEKGLLVPDHVITRLMMSELETRSAQHWLLDGFPR 92          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD2_RAT (Adenylate kinase 2, mitochondrial OS=Rattus norvegicus GN=Ak2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-ESGNDKFLIDGFPR 463
            LG PG+GKGTQ   + E+F   HL+ GD+LRA + SGSE G  ++  +  GK+V  E+ ++L++K +E  S  + FL+DGFPR
Sbjct:   21 LGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVVELIEKNLETPSCKNGFLLDGFPR 103          
BLAST of CX288980 vs. ExPASy Swiss-Prot
Match: KAD2_MOUSE (Adenylate kinase 2, mitochondrial OS=Mus musculus GN=Ak2 PE=1 SV=5)

HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  218 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-ESGNDKFLIDGFPR 463
            LG PG+GKGTQ   + E+F   HL+ GD+LRA + SGSE G  ++  +  GK+V  E+ ++L++K +E  S  + FL+DGFPR
Sbjct:   21 LGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVVELIEKNLETPSCKNGFLLDGFPR 103          
The following BLAST results are available for this feature:
BLAST of CX288980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_ECO7I2.616e-1445.78Adenylate kinase OS=Escherichia coli O7:K1 (strain... [more]
KAD_ECO572.616e-1445.78Adenylate kinase OS=Escherichia coli O157:H7 GN=ad... [more]
KAD_ECO552.616e-1445.78Adenylate kinase OS=Escherichia coli (strain 55989... [more]
KAD_ECO272.616e-1445.78Adenylate kinase OS=Escherichia coli O127:H6 (stra... [more]
KAD_ECO242.616e-1445.78Adenylate kinase OS=Escherichia coli O139:H28 (str... [more]
KAD_SHIDS3.417e-1445.78Adenylate kinase OS=Shigella dysenteriae serotype ... [more]
KAD_ENT383.417e-1445.78Adenylate kinase OS=Enterobacter sp. (strain 638) ... [more]
KAD4_RAT3.417e-1442.68Adenylate kinase isoenzyme 4, mitochondrial OS=Rat... [more]
KAD2_RAT3.417e-1445.78Adenylate kinase 2, mitochondrial OS=Rattus norveg... [more]
KAD2_MOUSE3.417e-1445.78Adenylate kinase 2, mitochondrial OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC02007F04SK IF1 Citrus clementina cDNA clone C02007F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288980 ID=CX288980; Name=CX288980; organism=Citrus clementina; type=EST; length=469bp
CTGCAGGAAAAAACTAACATTGGCAATTGGCATCCCTCTGCCTTCTTTCT
TTCCCTCCATATTCTTCTCTCTCTCTCCAAACAAAACAACGCTCGCAATT
CGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCTGATGGGAACTGT
GGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAACTGTGAAGAAGC
CCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGCGGAAAAGGAACCCAG
TGCGCAAACATTGTTGAACACTTTGGATACACCCATCTCAGTGCTGGCGA
TCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATGGAACCATGATTC
AGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAGGTCACAATTAAG
CTTCTTCAAAAAGCAATGGAGGAAAGTGGAAATGATAAATTTCTCATTGA
TGGTTTTCCCAGAAACGAG
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