CX288981

Overview
NameCX288981
Unique NameCX288981
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length478
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14306 contig Ccv1_Contig14306:43..520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_MYTCA (Histone H4 OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 2.493e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_MYRRU (Histone H4 OS=Myrmica ruginodis GN=His4 PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 2.493e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_MOUSE (Histone H4 OS=Mus musculus GN=Hist1h4a PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 2.493e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_MASBA (Histone H4 OS=Mastigamoeba balamuthi PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 2.493e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   27 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 108
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_MACFA (Histone H4 OS=Macaca fascicularis GN=QtsA-19327 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.493e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_HUMAN (Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 2.493e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_DROYA (Histone H4 OS=Drosophila yakuba GN=His4 PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 2.493e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_DROTE (Histone H4 OS=Drosophila teissieri GN=His4 PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 2.493e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_DROSI (Histone H4 OS=Drosophila simulans GN=His4 PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 2.493e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_DROSE (Histone H4 OS=Drosophila sechellia GN=His4 PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 2.493e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of CX288981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
H4_MYTCA2.493e-3997.56Histone H4 OS=Mytilus californianus PE=3 SV=3[more]
H4_MYRRU2.493e-3997.56Histone H4 OS=Myrmica ruginodis GN=His4 PE=3 SV=2[more]
H4_MOUSE2.493e-3997.56Histone H4 OS=Mus musculus GN=Hist1h4a PE=1 SV=2[more]
H4_MASBA2.493e-3997.56Histone H4 OS=Mastigamoeba balamuthi PE=3 SV=3[more]
H4_MACFA2.493e-3997.56Histone H4 OS=Macaca fascicularis GN=QtsA-19327 PE... [more]
H4_HUMAN2.493e-3997.56Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2[more]
H4_DROYA2.493e-3997.56Histone H4 OS=Drosophila yakuba GN=His4 PE=3 SV=2[more]
H4_DROTE2.493e-3997.56Histone H4 OS=Drosophila teissieri GN=His4 PE=3 SV... [more]
H4_DROSI2.493e-3997.56Histone H4 OS=Drosophila simulans GN=His4 PE=3 SV=... [more]
H4_DROSE2.493e-3997.56Histone H4 OS=Drosophila sechellia GN=His4 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC02007F05SK IF1 Citrus clementina cDNA clone C02007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288981 ID=CX288981; Name=CX288981; organism=Citrus clementina; type=EST; length=478bp
AAGAAAAATTCCCAATTAGTTTGAAAACCGTAATTAGCATTTTAATTTCG
TAGCAGAATGTCTGGACGCGGCAAGGGAGGCAAGGGATTGGGGAAGGGAG
GAGCCAAGAGACATCGCAAGGTGTTGCGTGATAACATTCAGGGCATCACC
AAGCCGGCTATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAG
CGGTCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCTTCTTGGAGA
ACGTCATTCGCGATGCTGTGACCTACACTGAGCACGCTCGCCGAAAGACG
GTGACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGGCAGGACTCT
CTATGGGTTTGGTGGTTGATGTGGCGTCGTTTTGTATTTTGTGTTTTAGG
ATTTTCCTTTTTTCCTGTAAATCAGTGAATGTGGTTGTGTCTAGCGAGTG
GGTTTAAATTGGAGGCAACTTGTATTTG
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