CX288981

Overview
NameCX288981
Unique NameCX288981
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length478
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_PSAMI (Histone H4 OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.238e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_PISOC (Histone H4 OS=Pisaster ochraceus PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.238e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_PISBR (Histone H4 OS=Pisaster brevispinus PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.238e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_PARLI (Histone H4 OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.238e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_LYTPI (Histone H4 OS=Lytechinus pictus PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.238e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_HOLTU (Histone H4 OS=Holothuria tubulosa PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.238e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_CAEEL (Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.238e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_APLCA (Histone H4 OS=Aplysia californica GN=His.H4 PE=3 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 2.111e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+ KTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKCKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H48_CHICK (Histone H4 type VIII OS=Gallus gallus GN=H4-VIII PE=3 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 2.111e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQ RTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQERTLYGFGG 103
[Close]
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_SOLST (Histone H4 OS=Solaster stimpsoni PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.757e-38
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVT+MDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTSMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of CX288981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
H4_PSAMI1.238e-3896.34Histone H4 OS=Psammechinus miliaris PE=1 SV=2[more]
H4_PISOC1.238e-3896.34Histone H4 OS=Pisaster ochraceus PE=3 SV=2[more]
H4_PISBR1.238e-3896.34Histone H4 OS=Pisaster brevispinus PE=3 SV=2[more]
H4_PARLI1.238e-3896.34Histone H4 OS=Paracentrotus lividus PE=3 SV=2[more]
H4_LYTPI1.238e-3896.34Histone H4 OS=Lytechinus pictus PE=3 SV=2[more]
H4_HOLTU1.238e-3896.34Histone H4 OS=Holothuria tubulosa PE=3 SV=2[more]
H4_CAEEL1.238e-3896.34Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1... [more]
H4_APLCA2.111e-3896.34Histone H4 OS=Aplysia californica GN=His.H4 PE=3 S... [more]
H48_CHICK2.111e-3896.34Histone H4 type VIII OS=Gallus gallus GN=H4-VIII P... [more]
H4_SOLST2.757e-3895.12Histone H4 OS=Solaster stimpsoni PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC02007F05SK IF1 Citrus clementina cDNA clone C02007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288981 ID=CX288981; Name=CX288981; organism=Citrus clementina; type=EST; length=478bp
AAGAAAAATTCCCAATTAGTTTGAAAACCGTAATTAGCATTTTAATTTCG
TAGCAGAATGTCTGGACGCGGCAAGGGAGGCAAGGGATTGGGGAAGGGAG
GAGCCAAGAGACATCGCAAGGTGTTGCGTGATAACATTCAGGGCATCACC
AAGCCGGCTATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAG
CGGTCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCTTCTTGGAGA
ACGTCATTCGCGATGCTGTGACCTACACTGAGCACGCTCGCCGAAAGACG
GTGACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGGCAGGACTCT
CTATGGGTTTGGTGGTTGATGTGGCGTCGTTTTGTATTTTGTGTTTTAGG
ATTTTCCTTTTTTCCTGTAAATCAGTGAATGTGGTTGTGTCTAGCGAGTG
GGTTTAAATTGGAGGCAACTTGTATTTG
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