CX288981

Overview
NameCX288981
Unique NameCX288981
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length478
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_DIAPU (Histone H4 OS=Diadromus pulchellus PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 2.757e-38
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 1
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+F +NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFWQNVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_PHYPO (Histone H4 OS=Physarum polycephalum GN=H41 PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 6.142e-38
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 1
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRIS  IYEETRGVLK FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISNTIYEETRGVLKTFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_CHLRE (Histone H4 OS=Chlamydomonas reinhardtii GN=H4-I PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 6.142e-38
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 1
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRTVLKTFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_MORAP (Histone H4 OS=Mortierella alpina GN=H4.1 PE=3 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 8.021e-38
Identity = 76/82 (92.68%), Postives = 81/82 (98.78%), Query Frame = 1
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103          
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_VOLCA (Histone H4 OS=Volvox carteri GN=H4-I PE=3 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.048e-37
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 1
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRTVLKNFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_EIMTE (Histone H4 OS=Eimeria tenella PE=3 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.048e-37
Identity = 75/82 (91.46%), Postives = 81/82 (98.78%), Query Frame = 1
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEE RGVLK+FLEN+I+D+VTYTEHARRKTVTAMD+VY+LKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEEIRGVLKVFLENIIKDSVTYTEHARRKTVTAMDIVYSLKRQGRTLYGFGG 103          
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_PHACH (Histone H4 OS=Phanerochaete chrysosporium GN=H4.1 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.334e-37
Identity = 76/81 (93.83%), Postives = 80/81 (98.77%), Query Frame = 1
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 363
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHA+RKTVTA+DVVYALKR GRTLYGFG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALKRSGRTLYGFG 102          
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_ASCSU (Histone H4 OS=Ascaris suum PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.334e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALK QGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKHQGRTLYGFGG 103          
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_AGABI (Histone H4 OS=Agaricus bisporus GN=hhfA PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.334e-37
Identity = 76/81 (93.83%), Postives = 80/81 (98.77%), Query Frame = 1
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 363
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHA+RKTVTA+DVVYALKR GRTLYGFG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALKRSGRTLYGFG 102          
BLAST of CX288981 vs. ExPASy Swiss-Prot
Match: H4_LITVA (Histone H4 OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 3.981e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1
Query:  121 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 366
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKR   TLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRXXXTLYGFGG 103          
The following BLAST results are available for this feature:
BLAST of CX288981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
H4_DIAPU2.757e-3895.12Histone H4 OS=Diadromus pulchellus PE=3 SV=3[more]
H4_PHYPO6.142e-3896.34Histone H4 OS=Physarum polycephalum GN=H41 PE=3 SV... [more]
H4_CHLRE6.142e-3896.34Histone H4 OS=Chlamydomonas reinhardtii GN=H4-I PE... [more]
H4_MORAP8.021e-3892.68Histone H4 OS=Mortierella alpina GN=H4.1 PE=3 SV=3[more]
H4_VOLCA1.048e-3796.34Histone H4 OS=Volvox carteri GN=H4-I PE=3 SV=2[more]
H4_EIMTE1.048e-3791.46Histone H4 OS=Eimeria tenella PE=3 SV=3[more]
H4_PHACH2.334e-3793.83Histone H4 OS=Phanerochaete chrysosporium GN=H4.1 ... [more]
H4_ASCSU2.334e-3793.90Histone H4 OS=Ascaris suum PE=3 SV=2[more]
H4_AGABI2.334e-3793.83Histone H4 OS=Agaricus bisporus GN=hhfA PE=3 SV=2[more]
H4_LITVA3.981e-3793.90Histone H4 OS=Litopenaeus vannamei PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC02007F05SK IF1 Citrus clementina cDNA clone C02007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288981 ID=CX288981; Name=CX288981; organism=Citrus clementina; type=EST; length=478bp
AAGAAAAATTCCCAATTAGTTTGAAAACCGTAATTAGCATTTTAATTTCG
TAGCAGAATGTCTGGACGCGGCAAGGGAGGCAAGGGATTGGGGAAGGGAG
GAGCCAAGAGACATCGCAAGGTGTTGCGTGATAACATTCAGGGCATCACC
AAGCCGGCTATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAG
CGGTCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCTTCTTGGAGA
ACGTCATTCGCGATGCTGTGACCTACACTGAGCACGCTCGCCGAAAGACG
GTGACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGGCAGGACTCT
CTATGGGTTTGGTGGTTGATGTGGCGTCGTTTTGTATTTTGTGTTTTAGG
ATTTTCCTTTTTTCCTGTAAATCAGTGAATGTGGTTGTGTCTAGCGAGTG
GGTTTAAATTGGAGGCAACTTGTATTTG
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