CX288984 | Citrus Genome Database

Overview


Name	CX288984
Unique Name	CX288984
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	552

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig168	contig	Ccv1_Contig168:1..552.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF5_MAIZE (Profilin-5 OS=Zea mays GN=PRO5 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 1.704e-62
Identity = 108/127 (85.04%), Postives = 120/127 (94.49%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVDDHLLC+IEG HLSAAAI+GHDGSVWAQSENFP+LKPEE+ G++ DF+EPGTLAPTGL++GGTKYMVIQGEPG VIRGKKG GG+TIKKT  +LIIGIYDEPMTPGQCNM+VERLGDYLI
Sbjct:    1 MSWQAYVDDHLLCDIEGQHLSAAAIVGHDGSVWAQSENFPELKPEEVAGMIKDFDEPGTLAPTGLFVGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMSLIIGIYDEPMTPGQCNMVVERLGDYLI 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF_CUCME (Profilin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.226e-62
Identity = 108/127 (85.04%), Postives = 119/127 (93.70%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVD+HL+CEIEGNHL++AAIIG DGSVWAQS+NFPQLKPEE+ GI+ DF +PGTLAPTGLY+GGTKYMVIQGEPGAVIRGKKGPGG T+KKT  AL+IGIYDEPMTPGQCNMIVERLGDYLI
Sbjct:    1 MSWQVYVDEHLMCEIEGNHLTSAAIIGQDGSVWAQSQNFPQLKPEEVAGIVGDFADPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKGPGGATVKKTGMALVIGIYDEPMTPGQCNMIVERLGDYLI 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROFX_ORYSJ (Profilin LP04 OS=Oryza sativa subsp. japonica GN=Os06g0152100 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 3.796e-62
Identity = 108/127 (85.04%), Postives = 119/127 (93.70%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVDDHL+CEI+GNHL+AAAI+GHDGSVWAQS NFPQ KPEEITGIM DF+EPG+LAPTGL+LGGTKYMVIQGEPG VIRGKKG GG+ +KKT  +LI+GIYDEPMTPGQCNMIVERLGDYLI
Sbjct:    1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLI 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROFX_ORYSI (Profilin LP04 OS=Oryza sativa subsp. indica GN=OsI_020954 PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 3.796e-62
Identity = 108/127 (85.04%), Postives = 119/127 (93.70%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVDDHL+CEI+GNHL+AAAI+GHDGSVWAQS NFPQ KPEEITGIM DF+EPG+LAPTGL+LGGTKYMVIQGEPG VIRGKKG GG+ +KKT  +LI+GIYDEPMTPGQCNMIVERLGDYLI
Sbjct:    1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLI 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF2_SOLLC (Profilin-2 OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 4.958e-62
Identity = 112/127 (88.19%), Postives = 118/127 (92.91%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVD+HLLCE EGNHL++AAIIG DG+VWAQS NFPQ KPEEITGIMNDF  PGTLAPTGLYLGGTKYMVIQGEP AVIRGKKGPGG+TIKKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLI
Sbjct:    1 MSWQTYVDEHLLCENEGNHLTSAAIIGQDGTVWAQSANFPQFKPEEITGIMNDFAVPGTLAPTGLYLGGTKYMVIQGEPEAVIRGKKGPGGITIKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLI 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF_CAPAN (Profilin OS=Capsicum annuum PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 8.457e-62
Identity = 111/127 (87.40%), Postives = 117/127 (92.13%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVDDHL+CEIEGN L++AAIIG DGSVWAQS  FPQ KPEEIT IMNDF EPGTLAPTGLYLGGTKYMVIQGE GAVIRGKKGPGG+T+KKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLI
Sbjct:    1 MSWQTYVDDHLMCEIEGNRLTSAAIIGQDGSVWAQSATFPQFKPEEITAIMNDFAEPGTLAPTGLYLGGTKYMVIQGEAGAVIRGKKGPGGITVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLI 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF4_MAIZE (Profilin-4 OS=Zea mays GN=PRO4 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 8.457e-62
Identity = 106/127 (83.46%), Postives = 120/127 (94.49%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVD+HL+CEIEG HLSAAAI+GHDGSVWAQSE+FP+LKPEE+ GI+ DF+EPGTLAPTGL++GGTKYMVIQGEPG VIRGKKG GG+TIKKT  +LIIG+YDEPMTPGQCNM+VERLGDYLI
Sbjct:    1 MSWQAYVDEHLMCEIEGQHLSAAAIVGHDGSVWAQSESFPELKPEEVAGIIKDFDEPGTLAPTGLFVGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMSLIIGVYDEPMTPGQCNMVVERLGDYLI 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF_CHEAL (Profilin OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.884e-61
Identity = 106/127 (83.46%), Postives = 120/127 (94.49%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVDDHL+C+IEGNHLS+AAI+GHDG+VWAQS +FPQLKPEE++ IM DFNEPG+LAPTGL+LGGTKYMVIQGEPG VIRGKKGPGGVTIKKT+ ALIIGIY EPMTPGQCNM+VER+GDYL+
Sbjct:    1 MSWQTYVDDHLMCDIEGNHLSSAAILGHDGTVWAQSPSFPQLKPEEVSAIMKDFNEPGSLAPTGLHLGGTKYMVIQGEPGDVIRGKKGPGGVTIKKTNQALIIGIYGEPMTPGQCNMVVERIGDYLV 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF_LITCN (Profilin OS=Litchi chinensis PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 4.197e-61
Identity = 106/127 (83.46%), Postives = 117/127 (92.13%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVDDHL+CE +G HL+AAAIIGHDGSVWAQS NFPQ KP EI  IM DF+EPG+LAPTGL+LGGTKYMVIQGEPGAVIRGKKGPGG+T+KKT+ ALIIGIYDEPMTPGQCNM+VERLGDYL+
Sbjct:    1 MSWQTYVDDHLMCETDGQHLTAAAIIGHDGSVWAQSANFPQFKPAEIAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGPGGITVKKTTQALIIGIYDEPMTPGQCNMVVERLGDYLV 127

[Close]

BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF_ARAHY (Profilin OS=Arachis hypogaea PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.595e-60
Identity = 108/127 (85.04%), Postives = 118/127 (92.91%), Query Frame = 2

Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVD+HLLCEIEG+HLS+AAI+G DG VWAQS +FPQ KPEEIT IMNDF EPG+LAPTGLYLGGTKYMVIQGEPGA+I GKKGPGGVTI+KT+ ALIIGIYD+PMTPGQCNMIVERLGDYLI
Sbjct:    1 MSWQTYVDNHLLCEIEGDHLSSAAILGQDGGVWAQSSHFPQFKPEEITAIMNDFAEPGSLAPTGLYLGGTKYMVIQGEPGAIIPGKKGPGGVTIEKTNQALIIGIYDKPMTPGQCNMIVERLGDYLI 127

The following BLAST results are available for this feature:

BLAST of CX288984 vs. ExPASy Swiss-Prot

BLAST of CX288984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90


Match Name	E-value	Identity	Description
PROF5_MAIZE	1.704e-62	85.04	Profilin-5 OS=Zea mays GN=PRO5 PE=1 SV=1	[more]
PROF_CUCME	2.226e-62	85.04	Profilin OS=Cucumis melo PE=1 SV=1	[more]
PROFX_ORYSJ	3.796e-62	85.04	Profilin LP04 OS=Oryza sativa subsp. japonica GN=O...	[more]
PROFX_ORYSI	3.796e-62	85.04	Profilin LP04 OS=Oryza sativa subsp. indica GN=OsI...	[more]
PROF2_SOLLC	4.958e-62	88.19	Profilin-2 OS=Solanum lycopersicum PE=1 SV=1	[more]
PROF_CAPAN	8.457e-62	87.40	Profilin OS=Capsicum annuum PE=1 SV=1	[more]
PROF4_MAIZE	8.457e-62	83.46	Profilin-4 OS=Zea mays GN=PRO4 PE=1 SV=1	[more]
PROF_CHEAL	1.884e-61	83.46	Profilin OS=Chenopodium album PE=1 SV=1	[more]
PROF_LITCN	4.197e-61	83.46	Profilin OS=Litchi chinensis PE=1 SV=1	[more]
PROF_ARAHY	1.595e-60	85.04	Profilin OS=Arachis hypogaea PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C02007F10SK IF1 Citrus clementina cDNA clone C02007F10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX288984 ID=CX288984; Name=CX288984; organism=Citrus clementina; type=EST; length=552bp
GTTGTTTCAACGCTATATCTCCGTGTCCAGTGTCTCCTTTTGTCTAGCTC
TTCACAAAATCTCTTCTCGACAAAAATTAAGTCTTAAACACACTCATTTG
TAAAAAGGCTTCAGGAAAAATAAAAAAAAATTCACAGAGAAATCAGAGGA
ATCTTCAAAGCAGAAAAAGATGTCGTGGCAAGCTTACGTCGATGATCATC
TGTTGTGTGAAATTGAGGGTAACCATCTCTCAGCTGCCGCTATCATCGGC
CACGACGGCAGCGTTTGGGCCCAGAGTGAAAACTTCCCTCAGTTAAAACC
TGAGGAAATAACTGGTATCATGAATGACTTTAATGAACCTGGAACACTAG
CACCAACTGGACTGTATCTTGGTGGCACAAAATATATGGTGATCCAGGGT
GAGCCAGGTGCTGTCATCCGAGGGAAGAAGGGCCCTGGTGGTGTTACCAT
CAAGAAGACCAGTGCGGCCTTAATCATTGGAATCTATGATGAGCCGATGA
CCCCTGGGCAGTGCAACATGATTGTTGAAAGGCTTGGTGATTATCTCATT
GA