CX288984

Overview
NameCX288984
Unique NameCX288984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig168 contig Ccv1_Contig168:1..552. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF1_PHLPR (Profilin-1 OS=Phleum pratense GN=PRO1 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.546e-58
Identity = 99/127 (77.95%), Postives = 116/127 (91.34%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVD+HL+CEIEG+HL++AAI+GHDG+VWAQS +FPQ KPEEITGIM DF+EPG LAPTG+++ G KYMVIQGEPG VIRGKKG GG+TIKKT  AL++GIYDEPMTPGQCNM+VERLGDYL+
Sbjct:    1 MSWQTYVDEHLMCEIEGHHLASAAILGHDGTVWAQSADFPQFKPEEITGIMKDFDEPGHLAPTGMFVAGAKYMVIQGEPGRVIRGKKGAGGITIKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLV 127          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF1_WHEAT (Profilin-1 (Fragment) OS=Triticum aestivum GN=PRO1 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.326e-58
Identity = 101/127 (79.53%), Postives = 113/127 (88.98%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVDDHL CEI+G HL++AAI+GHDGSVW +S NFP+ KPEEI GI+ DF EPG LAPTGL+LGGTKYMVIQGEPG VIRGKKG GG+TIKKT  ALI+GIYDEPMTPGQCN++VERLGDYLI
Sbjct:    1 MSWQTYVDDHLCCEIDGQHLTSAAILGHDGSVWTESPNFPKFKPEEIAGIVKDFEEPGHLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMALILGIYDEPMTPGQCNLVVERLGDYLI 127          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF_CYNDA (Profilin OS=Cynodon dactylon GN=PRO1 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.344e-58
Identity = 102/127 (80.31%), Postives = 115/127 (90.55%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVDDHL+CEIEG+HL++AAIIGHDG+VWAQS  FP  KPEE+  IM DF+EPG LAPTGL+LG TKYMVIQGEPGAVIRGKKG GGVT+KKT  AL+IGIYDEPMTPGQCNM++E+LGDYLI
Sbjct:    1 MSWQAYVDDHLMCEIEGHHLTSAAIIGHDGTVWAQSAAFPAFKPEEMANIMKDFDEPGFLAPTGLFLGPTKYMVIQGEPGAVIRGKKGSGGVTVKKTGQALVIGIYDEPMTPGQCNMVIEKLGDYLI 127          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF_APIGR (Profilin OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.344e-58
Identity = 106/130 (81.54%), Postives = 115/130 (88.46%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNH---LSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVDDHL+CE+EGN    L+AAAIIGHDGSVWAQS  FPQ+KPEEI GIM DF+EPG LAPTGLYLGG KYMVIQGEP AVIRGKKG GGVTIKKT  AL+ G+YDEP+TPGQCN+IVERLGDYLI
Sbjct:    1 MSWQAYVDDHLMCEVEGNPGQTLTAAAIIGHDGSVWAQSSTFPQIKPEEIAGIMKDFDEPGHLAPTGLYLGGAKYMVIQGEPNAVIRGKKGSGGVTIKKTGQALVFGVYDEPVTPGQCNVIVERLGDYLI 130          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF6_HEVBR (Profilin-6 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 7.409e-58
Identity = 100/127 (78.74%), Postives = 116/127 (91.34%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVDDHL+C+I+G+ L+AAAIIGHDGSVWAQS +FPQ K +E+  +M DF+EPG+LAPTGL+LGGTKYMVIQGEPGAVIRGKKG GG+T+KKT  ALIIGIYDEP+TPGQCNMIVERLGDYL+
Sbjct:    1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLL 127          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF3_WHEAT (Profilin-3 OS=Triticum aestivum GN=PRO3 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 7.409e-58
Identity = 102/127 (80.31%), Postives = 114/127 (89.76%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSW+AYVDDHL CEI+G +L++AAI+GHDGSVWAQS NFPQ KPEE  GI+ DF EPG LAPTGL+LGGTKYMVIQGEPG VIRGKKG GG+TIKKT  ALI+GIYDEPMTPGQCN++VERLGDYLI
Sbjct:    1 MSWKAYVDDHLCCEIDGQNLTSAAILGHDGSVWAQSPNFPQFKPEENAGIVKDFEEPGHLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMALILGIYDEPMTPGQCNLVVERLGDYLI 127          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF3_MALDO (Profilin-3 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 7.409e-58
Identity = 101/127 (79.53%), Postives = 117/127 (92.13%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVDDHL+C+I+GN L+AAAI+G DGSVW+QS +FP  KPEEI  I+ DF++PGTLAPTGL+LGGTKYMVIQGEPGAVIRGKKG GG+TIKKTS AL+IGIYDEP+TPGQCN++VERLGDYLI
Sbjct:    1 MSWQAYVDDHLMCDIDGNRLTAAAILGQDGSVWSQSASFPAFKPEEIAAILKDFDQPGTLAPTGLFLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTSQALLIGIYDEPVTPGQCNIVVERLGDYLI 127          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF1_PARJU (Profilin-1 OS=Parietaria judaica GN=PRO1 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 7.409e-58
Identity = 103/128 (80.47%), Postives = 117/128 (91.41%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEI-EGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVDDHL+C++ +GN  ++AAIIGHDGSVWAQS NFPQLKPEE+TGIMNDFNE G LAPTGL+LGGTKYMVIQGE GAVIRGKKG GG T+KKT  A++IGIYDEPMTPGQCN++VERLGDYL+
Sbjct:    1 MSWQAYVDDHLMCDVGDGNTPASAAIIGHDGSVWAQSANFPQLKPEEVTGIMNDFNEAGFLAPTGLFLGGTKYMVIQGESGAVIRGKKGSGGATLKKTGQAIVIGIYDEPMTPGQCNLVVERLGDYLL 128          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF1_HORVU (Profilin-1 OS=Hordeum vulgare GN=PRO1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 7.409e-58
Identity = 100/127 (78.74%), Postives = 112/127 (88.19%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVDDHL CEI+G HL++AAI+GHDG VW QS NFPQ KPEEI GI+ DF+EPG LAPTGL+LGGTKYMVIQGEPG VIRGKKG GG+TIKKT   LI+GIYDEPMTPGQCN++VERLGDYL+
Sbjct:    1 MSWQTYVDDHLCCEIDGQHLTSAAILGHDGRVWVQSPNFPQFKPEEIAGIIKDFDEPGHLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMPLILGIYDEPMTPGQCNLVVERLGDYLV 127          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF5_HEVBR (Profilin-5 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 9.676e-58
Identity = 100/127 (78.74%), Postives = 115/127 (90.55%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVDDHL+C+I+G+ L+AAAIIGHDGSVWAQS  FPQ K +E+  +M DF+EPG+LAPTGL+LGGTKYMVIQGEPGAVIRGKKG GG+T+KKT  ALIIGIYDEP+TPGQCNMIVERLGDYL+
Sbjct:    1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSGFPQFKSDEVAAVMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLL 127          
The following BLAST results are available for this feature:
BLAST of CX288984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
PROF1_PHLPR2.546e-5877.95Profilin-1 OS=Phleum pratense GN=PRO1 PE=1 SV=1[more]
PROF1_WHEAT3.326e-5879.53Profilin-1 (Fragment) OS=Triticum aestivum GN=PRO1... [more]
PROF_CYNDA4.344e-5880.31Profilin OS=Cynodon dactylon GN=PRO1 PE=1 SV=1[more]
PROF_APIGR4.344e-5881.54Profilin OS=Apium graveolens PE=1 SV=1[more]
PROF6_HEVBR7.409e-5878.74Profilin-6 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF3_WHEAT7.409e-5880.31Profilin-3 OS=Triticum aestivum GN=PRO3 PE=2 SV=1[more]
PROF3_MALDO7.409e-5879.53Profilin-3 OS=Malus domestica PE=1 SV=1[more]
PROF1_PARJU7.409e-5880.47Profilin-1 OS=Parietaria judaica GN=PRO1 PE=1 SV=1[more]
PROF1_HORVU7.409e-5878.74Profilin-1 OS=Hordeum vulgare GN=PRO1 PE=2 SV=1[more]
PROF5_HEVBR9.676e-5878.74Profilin-5 OS=Hevea brasiliensis PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02007F10SK IF1 Citrus clementina cDNA clone C02007F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288984 ID=CX288984; Name=CX288984; organism=Citrus clementina; type=EST; length=552bp
GTTGTTTCAACGCTATATCTCCGTGTCCAGTGTCTCCTTTTGTCTAGCTC
TTCACAAAATCTCTTCTCGACAAAAATTAAGTCTTAAACACACTCATTTG
TAAAAAGGCTTCAGGAAAAATAAAAAAAAATTCACAGAGAAATCAGAGGA
ATCTTCAAAGCAGAAAAAGATGTCGTGGCAAGCTTACGTCGATGATCATC
TGTTGTGTGAAATTGAGGGTAACCATCTCTCAGCTGCCGCTATCATCGGC
CACGACGGCAGCGTTTGGGCCCAGAGTGAAAACTTCCCTCAGTTAAAACC
TGAGGAAATAACTGGTATCATGAATGACTTTAATGAACCTGGAACACTAG
CACCAACTGGACTGTATCTTGGTGGCACAAAATATATGGTGATCCAGGGT
GAGCCAGGTGCTGTCATCCGAGGGAAGAAGGGCCCTGGTGGTGTTACCAT
CAAGAAGACCAGTGCGGCCTTAATCATTGGAATCTATGATGAGCCGATGA
CCCCTGGGCAGTGCAACATGATTGTTGAAAGGCTTGGTGATTATCTCATT
GA
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