CX288984

Overview
NameCX288984
Unique NameCX288984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig168 contig Ccv1_Contig168:1..552. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF_HELAN (Profilin OS=Helianthus annuus PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.353e-51
Identity = 91/129 (70.54%), Postives = 112/129 (86.82%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQAYVD+HL+C+IEG   HL++AAI+G DG+VWAQS  FPQ KPEE+ GI+ +F+E GTLAPTG+++ G KYMV+QGEPGAVIRGKKG GG+ IKKT  A+I+GIYDEP+ PGQCNM+VERLGDYL+
Sbjct:    1 MSWQAYVDEHLMCDIEGTGQHLTSAAILGLDGTVWAQSAKFPQFKPEEMKGIIKEFDEAGTLAPTGMFIAGAKYMVLQGEPGAVIRGKKGAGGICIKKTGQAMIMGIYDEPVAPGQCNMVVERLGDYLL 129          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF1_ARTVU (Profilin-1 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 5.686e-50
Identity = 90/129 (69.77%), Postives = 107/129 (82.95%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVDDHL+C+IEG   HL++AAI G DG+VWA+S +FP+ KP EI  I+ +FNE G LAPTGL+LGG KYMVIQGE GAVIRGKKG GG+ IKKT  A++ GIYDEP+ PGQCNM+VERLGDYL+
Sbjct:    1 MSWQTYVDDHLMCDIEGTGQHLTSAAIFGTDGTVWAKSASFPEFKPNEIDAIIKEFNEAGQLAPTGLFLGGAKYMVIQGEAGAVIRGKKGAGGICIKKTGQAMVFGIYDEPVAPGQCNMVVERLGDYLL 129          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF_BRABE (Profilin OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.738e-23
Identity = 55/127 (43.31%), Postives = 81/127 (63.78%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVD HL+       ++ AAI G DGS+WA+S    +L  +E+  +   F++   LA  G+ +GGTKY+ + G+   +IRGKK   GV I KT  A+++ +Y EP+ P QC ++VE+LGD+LI
Sbjct:    1 MSWQQYVDQHLVAT---QCVTMAAICGLDGSIWAKSNGL-ELSQDEVATLARSFSKDEVLAANGIRIGGTKYIYLSGDD-KLIRGKKDRQGVHIVKTKTAMVMALYAEPILPEQCAVVVEKLGDWLI 122          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF1_PHYPO (Profilin-A OS=Physarum polycephalum GN=PROA PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.320e-22
Identity = 57/126 (45.24%), Postives = 81/126 (64.29%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYL 547
            MSWQAYVDD L   +   H+  AAIIGHDG+VWA S+N   LK  E   I+N F +  ++   G+++ G KY+ I+ +  ++  GKKG GGV + KT  +++IG Y+E + PGQ   +VE+L DYL
Sbjct:    1 MSWQAYVDDQL---VGTGHVIGAAIIGHDGNVWA-SKNL-SLKAGEGAKIVNGFKDSASVLSGGIFVDGQKYLTIKADDKSIY-GKKGAGGVVLVKTGQSVLIGHYNETIQPGQATTVVEKLADYL 120          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF1_DICDI (Profilin-1 OS=Dictyostelium discoideum GN=proA PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.489e-21
Identity = 58/127 (45.67%), Postives = 76/127 (59.84%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIG-HDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYL 547
            MSWQ YVD+ L     G  LS  AI+G +DG VWA+S      KPE   GI   F  P  +   G  +GG KYM I+G+P ++  GKKG  G  + +T  A+I+GIYD+ + PG   +IVE+LGDYL
Sbjct:    1 MSWQQYVDEQLT----GAGLSQGAILGANDGGVWAKSSGINITKPEG-DGIAALFKNPAEVFAKGALIGGVKYMGIKGDPQSIY-GKKGATGCVLVRTGQAIIVGIYDDKVQPGSAALIVEKLGDYL 121          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF_DROME (Profilin OS=Drosophila melanogaster GN=chic PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.243e-21
Identity = 53/127 (41.73%), Postives = 78/127 (61.42%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVD+ LL       ++ A I GHDG++WAQS  F   K EE++ +++ F++   L   G+ L G +Y+ + G    V+R K G  GV   KT+ A+I+ IY++P+ P Q   +VE+LGDYLI
Sbjct:    1 MSWQDYVDNQLLAS---QCVTKACIAGHDGNIWAQSSGFEVTK-EELSKLISGFDQQDGLTSNGVTLAGQRYIYLSGTD-RVVRAKLGRSGVHCMKTTQAVIVSIYEDPVQPQQAASVVEKLGDYLI 122          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF_BOMMO (Profilin OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.595e-20
Identity = 52/127 (40.94%), Postives = 76/127 (59.84%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVD  L+       ++ AAI GHDG+VWA+SE F ++  +E+  I+  F     L   G+ + GT+Y+ + G    +IR K G  GV   KT  A++I +Y+EP+ P Q   +VE+LG+YLI
Sbjct:    1 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLI 122          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF2_ACACA (Profilin-2 OS=Acanthamoeba castellanii PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 4.695e-20
Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MSWQ YVD +L   +    ++ AAIIGHDG+ WA S  F  + P     + N F +   +   G  L GT+Y+ I+ +  +V  GKKG  GV   KTS A++IG+Y+E + PG    +VE+L DYLI
Sbjct:    1 MSWQTYVDTNL---VGTGAVTQAAIIGHDGNTWATSAGFA-VSPANGAALANAFKDATAIRSNGFELAGTRYVTIRADDRSVY-GKKGSAGVITVKTSKAILIGVYNEKIQPGTAANVVEKLADYLI 122          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF_APIME (Profilin OS=Apis mellifera PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.132e-20
Identity = 52/127 (40.94%), Postives = 78/127 (61.42%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            MS Q YVD  LL       ++ AAI GHDG++WA+SE F ++  EE+T ++  F E   L  +G+ L G +Y+ + G    VIR K G  GV   KT+ A+++ +Y++P+ P Q   +VE+LGDYL+
Sbjct:    1 MSCQDYVDKQLLAS---RCVTKAAIAGHDGNLWAKSEGF-EVSKEELTKLVQGFEEQDILTSSGVTLAGNRYIYLSGTD-RVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLV 122          
BLAST of CX288984 vs. ExPASy Swiss-Prot
Match: PROF2_DICDI (Profilin-2 OS=Dictyostelium discoideum GN=proB PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.365e-18
Identity = 52/128 (40.62%), Postives = 75/128 (58.59%), Query Frame = 2
Query:  170 MSWQAYVDDHLLCEIEGNHLSAAAIIGH-DGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 550
            M+WQAYVD++LL    G   ++AA++G  DGSVWA S  F   + + IT +   F + G    TG+++ G KYM I+ +  +   GK G GGV   KT   +I+ +YD+ + PG    I E+L DYLI
Sbjct:    1 MTWQAYVDNNLL----GAGFASAALLGAADGSVWAHSAGFNVAEGKAITAL---FQKDGAAFATGIHVAGKKYMAIKSDTRSAY-GKLGAGGVVCVKTLTCIIVAVYDDKLQPGAAANIAEKLADYLI 120          
The following BLAST results are available for this feature:
BLAST of CX288984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
PROF_HELAN1.353e-5170.54Profilin OS=Helianthus annuus PE=1 SV=1[more]
PROF1_ARTVU5.686e-5069.77Profilin-1 OS=Artemisia vulgaris PE=1 SV=3[more]
PROF_BRABE7.738e-2343.31Profilin OS=Branchiostoma belcheri PE=2 SV=1[more]
PROF1_PHYPO1.320e-2245.24Profilin-A OS=Physarum polycephalum GN=PROA PE=3 S... [more]
PROF1_DICDI2.489e-2145.67Profilin-1 OS=Dictyostelium discoideum GN=proA PE=... [more]
PROF_DROME7.243e-2141.73Profilin OS=Drosophila melanogaster GN=chic PE=1 S... [more]
PROF_BOMMO3.595e-2040.94Profilin OS=Bombyx mori PE=2 SV=1[more]
PROF2_ACACA4.695e-2041.73Profilin-2 OS=Acanthamoeba castellanii PE=1 SV=3[more]
PROF_APIME6.132e-2040.94Profilin OS=Apis mellifera PE=2 SV=1[more]
PROF2_DICDI3.365e-1840.63Profilin-2 OS=Dictyostelium discoideum GN=proB PE=... [more]

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Properties
Property NameValue
Genbank descriptionC02007F10SK IF1 Citrus clementina cDNA clone C02007F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288984 ID=CX288984; Name=CX288984; organism=Citrus clementina; type=EST; length=552bp
GTTGTTTCAACGCTATATCTCCGTGTCCAGTGTCTCCTTTTGTCTAGCTC
TTCACAAAATCTCTTCTCGACAAAAATTAAGTCTTAAACACACTCATTTG
TAAAAAGGCTTCAGGAAAAATAAAAAAAAATTCACAGAGAAATCAGAGGA
ATCTTCAAAGCAGAAAAAGATGTCGTGGCAAGCTTACGTCGATGATCATC
TGTTGTGTGAAATTGAGGGTAACCATCTCTCAGCTGCCGCTATCATCGGC
CACGACGGCAGCGTTTGGGCCCAGAGTGAAAACTTCCCTCAGTTAAAACC
TGAGGAAATAACTGGTATCATGAATGACTTTAATGAACCTGGAACACTAG
CACCAACTGGACTGTATCTTGGTGGCACAAAATATATGGTGATCCAGGGT
GAGCCAGGTGCTGTCATCCGAGGGAAGAAGGGCCCTGGTGGTGTTACCAT
CAAGAAGACCAGTGCGGCCTTAATCATTGGAATCTATGATGAGCCGATGA
CCCCTGGGCAGTGCAACATGATTGTTGAAAGGCTTGGTGATTATCTCATT
GA
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