CX288992

Overview
NameCX288992
Unique NameCX288992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length640
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig432 contig Ccv1_Contig432:57..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: BARS_ARATH (Alpha-barbatene synthase OS=Arabidopsis thaliana GN=BS PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.092e-25
Identity = 59/166 (35.54%), Postives = 97/166 (58.43%), Query Frame = 1
Query:   58 KWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDTE-ELKDFIASLLINPV 552
            KW    +VP+ DEY+               S +G+G+I  KE+FEWL S P+ +R   A  RLM+D+   + +  +G+ A+++  Y+N++G T+EEA  E  K   +  K +NEECL+ T +P  +LM+ +N  R+ DV+Y   D Y   E +LK+++  LL++P+
Sbjct:  390 KWARGGHVPSFDEYIESGGAEIGTYATIACSIMGLGEIGKKEAFEWLISRPKLVRILGAKTRLMDDIADFEEDMEKGYTANALNYYMNEHGVTKEEASRELEKMNGDMNKIVNEECLKITTMPRRILMQSVNYARSLDVLYTADDVYNHREGKLKEYMRLLLVDPI 555          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.301e-24
Identity = 62/187 (33.16%), Postives = 101/187 (54.01%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGY-TDTEELKDFIASLLINPVPI 558
            + Y K+A  +  ++Y  EAKWY   Y P++ EY+  A IS   P +   ++  + + +TKE+ + L   P  IR S  + RL +D+ +   E  RG V  +++CY+N+ GA+EE A    +  +S  WK +N++    +      +   LNL R A  +Y++ DG+     E KD I SLLI P+P+
Sbjct:  408 IKYLKKAWVDLCRYYLVEAKWYSNKYRPSLQEYIENAWISIGAPTILVHAYFFVTNPITKEALDCLEEYPNIIRWSSIIARLADDLGTSTDELKRGDVPKAIQCYMNETGASEEGAREYIKYLISATWKKMNKDRAASSPFSHIFIEIALNLARMAQCLYQHGDGHGLGNRETKDRILSLLIQPIPL 594          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.254e-23
Identity = 59/189 (31.22%), Postives = 109/189 (57.67%), Query Frame = 1
Query:    7 YAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSI-RASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECL--RPTLVPVPLLMRILNLTRAADVVYKYKDGYTDTEELK--DFIASLLINPVPI 558
            + K++  +  K Y  EAKWY   + P ++EYM  A IS + P +    +    D ++ +  E L  + +++ R S +V RL ND+V+   E +RG V  S++CY+++ GA+E++A S  R+ +++ W ++N E +    +++    +  ++NL R +  +Y+Y DG+   E+ K  D + SLL NP+P+
Sbjct:  402 FLKKSWTDVSKAYLVEAKWYKSGHKPNLEEYMQNARISISSPTIFVHFYCVFSDQLSIQVLETLSQHQQNVVRCSSSVFRLANDLVTSPDELARGDVCKSIQCYMSETGASEDKARSHVRQMINDLWDEMNYEKMAHSSSILHHDFMETVINLARMSQCMYQYGDGHGSPEKAKIVDRVMSLLFNPIPL 590          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: LINS_ARATH (Linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.225e-23
Identity = 54/161 (33.54%), Postives = 91/161 (56.52%), Query Frame = 1
Query:   13 KEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQY-GATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKD 492
            +++  +  K +  EAKW++  Y+PT +EYM   ++SS    +   +++ +G+ +TKE  E + SNP  + ++  + RL +D+ S K E   G   S VECY+N+Y G+T +EA +   +++S AWK +N ECL P           LN+ R   ++Y Y D
Sbjct:  396 RQSWASLCKAFLVEAKWFNSGYLPTTEEYMKNGVVSSGVHLVMLHAYILLGEELTKEKVELIESNPGIVSSAATILRLWDDLGSAKDENQDGTDGSYVECYLNEYKGSTVDEARTHVAQKISRAWKRLNRECLNPCPFSRSFSKACLNIARTVPLMYSYDD 556          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.883e-22
Identity = 61/190 (32.11%), Postives = 102/190 (53.68%), Query Frame = 1
Query:    7 YAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSI-RASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEE---CLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDTEELK--DFIASLLINPVPI 558
            Y K++  +  + Y  EAKWY + Y P+++EYM  A IS + P +    +    D ++ ++ E L  + + I R S  V RL ND+ +   E +RG V  SV+CY+++ GA+EE A     + +S+ W D+N E       +          +NL R +  +Y+Y DG+   E+ K  D + SLL++P+P+
Sbjct:  405 YLKKSWADLCRTYLVEAKWYKRGYKPSLEEYMQNAWISISAPTILIHFYCVFSDQISVQNLETLSQHRQHIVRCSATVLRLANDLGTSPTELARGDVLKSVQCYMHETGASEERARDHVHQMISDMWDDMNSETKTACNSSSRSRGFKEAAMNLARMSQCMYQYGDGHGCPEKAKTIDRVQSLLVDPIPL 594          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.174e-21
Identity = 57/184 (30.98%), Postives = 96/184 (52.17%), Query Frame = 1
Query:   13 KEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECL-RPTLVPVPLLMRILNLTRAADVVYKYKDGY-TDTEELKDFIASLLINPVPI 558
            K A    ++ Y  EAKWYH  Y P ++EY+   L+S   P + TIS++   + + K+  E+L SNP  +  S  + RL +D+ +   E  RG V  S++CY+++ GA+EE A    +  +   WK +N     + + +       +LNL R +  +Y + DG+    +E  D   +LL  P+P+
Sbjct:  408 KNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVARQHIKDMMRQMWKKVNAYTADKDSPLTGTTTEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPL 591          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.174e-21
Identity = 61/192 (31.77%), Postives = 103/192 (53.65%), Query Frame = 1
Query:    7 YAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSI-RASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMR-----ILNLTRAADVVYKYKDGY--TDTEELKDFIASLLINPVPI 558
            Y K++  +  K Y  EAKWY   Y P+V+EYM  A IS + P +    +      ++ +  E L    + + R S  V RL ND+ +   E +RG V  SV+CY+++ G +EEEA +  ++ +S+ W ++N E  R       LL R      +NL R +  +Y++ DG+   D  ++ D + +LL++P+P+
Sbjct:  407 YFKKSWADLCKAYLVEAKWYKGGYKPSVEEYMQNAWISISAPTMLIHFYCAFSGQISVQILESLVQQQQDVVRCSATVLRLANDLATSPDELARGDVLKSVQCYMHETGVSEEEARTHVQQMISHTWDEMNYEA-RTAARSSSLLSRRFVETAMNLARMSQCMYQHGDGHGCPDKAKIVDRVQTLLVDPIPL 597          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: TPS02_ARATH (Probable terpenoid synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS02 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.002e-21
Identity = 57/188 (30.32%), Postives = 97/188 (51.60%), Query Frame = 1
Query:    7 YAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEE--CLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDTEELK--DFIASLLINPVPI 558
            Y K+   +  K +  E+KWY   + P+ +EYM   +ISS+ P +    F  + D ++ ++      N   +R+   + RL ND+ +   E +RG    SV+CY+ +  A+EEEA    +  +S++W  IN +      + +P   L    NL R    +Y++ DG+   E+ K  D+I S+L NPVP+
Sbjct:  413 YLKQVWTDLFKTFLTESKWYKTGHKPSFEEYMQNGVISSSVPTILLHLFSVLSDHISDQTLTDDSKNHSVVRSCATILRLANDLATSTEEMARGDSPKSVQCYMYETRASEEEARRHMQSMISDSWDIINSDLKTAHTSSLPRGFLAAAANLNRVVQCIYRHGDGHGSPEKTKTVDYIQSVLFNPVPL 600          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.695e-20
Identity = 57/189 (30.16%), Postives = 100/189 (52.91%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFS-NPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDI-NEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDTEEL-KDFIASLLINPVPI 558
            + Y K+ M    KH+  EAKW++  Y PT+ EY+    +S     +   ++    + VTKE+ E L   +P  +R +  + RL +D+ +   E  RG V  S++CY++  GA+E+EA    +  +S +WK++ NE+    +      +    NL RA+  +Y+Y DG+     L K+ +  L+I P+P+
Sbjct:  434 IEYFKKLMVELCKHHLQEAKWFYSGYKPTLQEYVENGWLSVGGQVILMHAYFAFTNPVTKEALECLKDGHPNIVRHASIILRLADDLGTLSDELKRGDVPKSIQCYMHDTGASEDEAREHIKYLISESWKEMNNEDGNINSFFSNEFVQVCQNLGRASQFIYQYGDGHASQNNLSKERVLGLIITPIPM 622          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: BPPS_SALOF ((+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.099e-19
Identity = 54/185 (29.19%), Postives = 96/185 (51.89%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKES-FEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGY-TDTEELKDFIASLLINP 549
            L Y ++++ + V+ YF EAKWYH  Y P++DEY+ +A IS A P + + ++    +     +  + L+     +  +  + RL +D+ +  FE +RG V  +++CY+ +  A+EEEA    +  +  AWKD+N         P  ++    N+ R A  +Y + DG+     +  + IA LL  P
Sbjct:  412 LQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEP 596          
The following BLAST results are available for this feature:
BLAST of CX288992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
BARS_ARATH5.092e-2535.54Alpha-barbatene synthase OS=Arabidopsis thaliana G... [more]
MYRS_QUEIL3.301e-2433.16Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
MYRS1_ARATH1.254e-2331.22Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]
LINS_ARATH6.225e-2333.54Linalool synthase, chloroplastic OS=Arabidopsis th... [more]
CINS_ARATH6.883e-2232.111,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
RLC1_CITLI1.174e-2130.98(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
MYRS2_ARATH1.174e-2131.77Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
TPS02_ARATH2.002e-2130.32Probable terpenoid synthase 2, chloroplastic OS=Ar... [more]
TPS1_CANSA1.695e-2030.16(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
BPPS_SALOF1.099e-1929.19(+)-bornyl diphosphate synthase, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02007G07SK IF1 Citrus clementina cDNA clone C02007G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288992 ID=CX288992; Name=CX288992; organism=Citrus clementina; type=EST; length=640bp
CTCCATTATGCGAAAGAAGCGATGAAGAATCAAGTTAAGCATTACTTCTT
TGAAGCTAAATGGTATCATCAGAATTATGTTCCGACGGTGGATGAGTACA
TGACGGTTGCATTAATTAGCTCTGCCCACCCAAATTTGTCAACCATATCT
TTTGTTGGCATGGGAGACATTGTAACTAAAGAATCTTTTGAATGGTTATT
CAGCAATCCTAGATCGATTAGGGCTTCTTGTGCAGTTGGCAGACTAATGA
ATGACATGGTGTCACACAAGTTTGAACAAAGCAGAGGGCACGTTGCCTCA
AGCGTTGAGTGTTACATCAACCAATATGGAGCAACAGAAGAGGAAGCATA
CAGTGAGTTCCGGAAACAAGTTTCAAATGCATGGAAGGATATAAATGAGG
AATGCCTGCGCCCAACTCTTGTGCCAGTGCCACTTCTTATGCGAATTCTC
AATCTTACACGAGCTGCAGATGTCGTTTACAAGTATAAAGATGGCTACAC
TGACACCGAAGAGCTGAAAGATTTTATTGCTTCTCTGCTTATTAATCCTG
TGCCCATATGAGCATGATATTAACCTTATGTTTCAACACCCTGCTGGAAA
ATAATTAGTCCATTGCCGTTTCAGCTTGGATGCTTTTTAA
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