CX288992

Overview
NameCX288992
Unique NameCX288992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length640
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig432 contig Ccv1_Contig432:57..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: TPSD1_PICAB (Levopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-LAS PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.533e-16
Identity = 55/187 (29.41%), Postives = 92/187 (49.20%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQY-GATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYT--DTEELKDFIASLLINPV 552
            L Y +   + Q++ Y  EA+W    YVP+ DEY+  A +S A   +  IS +  G+I+T +    +    R ++     GRL+ND  +++ E+ +G VAS+V+CY+  +   +EEEA       + NA  ++N E +    VP      +    R   + Y   DG T     E+K+ + + L  PV
Sbjct:  672 LGYIRNVWEIQLEAYTKEAEWSAARYVPSFDEYIDNASVSIALGTVVLISALFTGEILTDDVLSKIGRGSRFLQLMGLTGRLVNDTKTYEAERGQGEVASAVQCYMKDHPEISEEEALKHVYTVMENALDELNREFVNNREVPDSCRRLVFETARIMQLFYMDGDGLTLSHETEIKEHVKNCLFQPV 858          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: TPSDV_ABIGR (Abietadiene synthase, chloroplastic OS=Abies grandis GN=ag22 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.626e-16
Identity = 53/187 (28.34%), Postives = 94/187 (50.27%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQY-GATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDTE--ELKDFIASLLINPV 552
            L Y +   K Q++ Y  EA+W    YVP+ +EY+  A +S A   +  IS +  G+++T E    +    R ++     GRL+ND  +++ E+ +G VAS+++CY+  +   +EEEA       + NA +++N E +    +P      +    R   + Y   DG T +   E+K+ + + L  PV
Sbjct:  682 LGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVN-NKIPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPV 867          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: TPSD1_PINTA (Levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.626e-16
Identity = 55/187 (29.41%), Postives = 93/187 (49.73%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQY-GATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYT--DTEELKDFIASLLINPV 552
            L Y ++  + Q++ Y  EA+W    YVP+ DEY+  A +S A   +  IS +  G+I+T +    +  + R +      GRL+ND  +++ E+ +G VAS+V+CY+  +   +EEEA       + NA  ++N E +    VP      +    R   + Y   DG T     E+K+ + + L  PV
Sbjct:  663 LSYIQKVWEVQLEAYTKEAEWSAVRYVPSYDEYIGNASVSIALGTVVLISALFTGEILTDDILSKIGRDSRFLYLMGLTGRLVNDTKTYQAERGQGEVASAVQCYMKDHPEISEEEALKHVYTIMDNALDELNREFVNNRDVPDTCRRLVFETARIMQLFYMDGDGLTLSHNMEIKEHVKNCLFQPV 849          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: TASY_TAXCH (Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.626e-16
Identity = 52/175 (29.71%), Postives = 86/175 (49.14%), Query Frame = 1
Query:   43 YFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYI-NQYGATEEEAYSEFRKQVSNAWKDINEECLRPTL-VPVPLLMRILNLTRAADVVYKYKDGY-TDTEELKDFIASLLINPVPI 558
            Y  E +W    Y+PT +EY+    IS      +    + MG++V  +  E +              RL ND  +++ E++RG  AS + CY+ +  GATEE+A     + V  A K+ + E  +P+  +P+     I NL     + YK+ DGY    EE+KD+I  + I+P+ +
Sbjct:  688 YVQEREWLDAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNLGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 862          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: TASY_TAXBR (Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.257e-15
Identity = 52/175 (29.71%), Postives = 86/175 (49.14%), Query Frame = 1
Query:   43 YFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYI-NQYGATEEEAYSEFRKQVSNAWKDINEECLRPTL-VPVPLLMRILNLTRAADVVYKYKDGY-TDTEELKDFIASLLINPVPI 558
            Y  E +W    Y+PT +EY+    IS      +    + MG++V  +  E +              RL ND  +++ E++RG  AS + CY+ +  GATEE+A     + V  A K+ + E  +P+  +P+     I NL     + YK+ DGY    EE+KD+I  + I+P+ +
Sbjct:  688 YVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 862          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: TASY_TAXBA (Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.257e-15
Identity = 52/175 (29.71%), Postives = 86/175 (49.14%), Query Frame = 1
Query:   43 YFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYI-NQYGATEEEAYSEFRKQVSNAWKDINEECLRPTL-VPVPLLMRILNLTRAADVVYKYKDGY-TDTEELKDFIASLLINPVPI 558
            Y  E +W    Y+PT +EY+    IS      +    + MG++V  +  E +              RL ND  +++ E++RG  AS + CY+ +  GATEE+A     + V  A K+ + E  +P+  +P+     I NL     + YK+ DGY    EE+KD+I  + I+P+ +
Sbjct:  688 YVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 862          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: TPSD4_ABIGR (Delta-selinene synthase OS=Abies grandis GN=ag4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.642e-15
Identity = 48/184 (26.09%), Postives = 95/184 (51.63%), Query Frame = 1
Query:   13 KEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQY-GATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDG-YTDTEELKDFIASLLINPVPI 558
            K+  K  ++ Y  EA+W    ++PT +EY+   + SS    L+    + +  ++     E + S  + +      GR+ +D+   + E+ RG +ASS++CY+ +   +T E A +  +  ++ + ++ N E ++   VP+       N+ R    +YKY+DG Y   +E+KD I  +L++ VP+
Sbjct:  396 KDCWKRYIESYLQEAEWIATGHIPTFNEYIKNGMASSGMCILNLNPLLLLDKLLPDNILEQIHSPSKILDLLELTGRIADDLKDFEDEKERGEMASSLQCYMKENPESTVENALNHIKGILNRSLEEFNWEFMKQDSVPMCCKKFTFNIGRGLQFIYKYRDGLYISDKEVKDQIFKILVHQVPM 579          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: TPSD2_PICAB (Isopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-ISO PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.144e-15
Identity = 53/187 (28.34%), Postives = 93/187 (49.73%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQY-GATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDTE--ELKDFIASLLINPV 552
            L Y +  ++  +  +  EA+W    YVP+ DEY+  A +S +   L  IS +  G+I+T +    +    R ++     GRL+ND  +++ E+ +G VAS+V+CY+ ++   +EEEA       + NA  ++N E +    VP      +    R   + Y   DG T +   E+K+ + + L  PV
Sbjct:  680 LGYIRNVLEILLAAHTKEAEWSAARYVPSFDEYIENASVSISLGTLVLISVLFTGEILTDDVLSKIGRGSRFLQLMGLTGRLVNDTKTYEAERGQGEVASAVQCYMKEHPEISEEEALKHVYTVMENALDELNREFVNNRDVPDSCRRLVFETARIMQLFYMEGDGLTLSHEMEIKEHVKNCLFQPV 866          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.144e-15
Identity = 51/186 (27.42%), Postives = 90/186 (48.39%), Query Frame = 1
Query:    7 YAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVP----LLMRILNLTRAADVVYKYKDGY-TDTEELKDFIASLLINP 549
            Y + +  + V+ Y  EA WY+  Y P+++EY+  A IS + P + +  +  + + + + + E L+     +  S  + RL +D+ + + E  RG V  +++CY+N   A+E EA    +  +  AWK++N      T    P    L+    NL RAA  +Y   DG+     E+   +  LL  P
Sbjct:  406 YLQRSWVSLVEGYLKEAYWYYNGYKPSLEEYLNNAKISISAPTIISQLYFTLANSIDETAIESLYQYHNILYLSGTILRLADDLGTSQHELERGDVPKAIQCYMNDTNASEREAVEHVKFLIREAWKEMNTV---TTASDCPFTDDLVAAAANLARAAQFIYLDGDGHGVQHSEIHQQMGGLLFQP 588          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: GBIS1_ARATH ((Z)-gamma-bisabolene synthase 1 OS=Arabidopsis thaliana GN=TPS12 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.144e-15
Identity = 54/167 (32.34%), Postives = 88/167 (52.69%), Query Frame = 1
Query:   58 KWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVY-KYKDGYTDTE-ELKDFIASLLINPV 552
            KW     VP+ +E++ V  I+         SFVGMG+   KE++EW+F   +S                   + S G  A+++  Y+ Q+  T+EEA  E ++ + +  K INEE L+ T VP  +L + LN  R  +++Y K  D Y  +E +LK++I +LLI+P+
Sbjct:  386 KWARGIQVPSFEEHVEVGGIALTSYATLMYSFVGMGETAGKEAYEWVFLYCQS-------------------DMSNGFAANAINYYMKQFVVTKEEAILECQRMIVDINKTINEELLKTTSVPGRVLKQALNFGRLLELLYTKSDDIYNCSEGKLKEYIVTLLIDPI 533          
The following BLAST results are available for this feature:
BLAST of CX288992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
TPSD1_PICAB2.533e-1629.41Levopimaradiene synthase, chloroplastic OS=Picea a... [more]
TPSDV_ABIGR9.626e-1628.34Abietadiene synthase, chloroplastic OS=Abies grand... [more]
TPSD1_PINTA9.626e-1629.41Levopimaradiene synthase, chloroplastic OS=Pinus t... [more]
TASY_TAXCH9.626e-1629.71Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2... [more]
TASY_TAXBR1.257e-1529.71Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=... [more]
TASY_TAXBA1.257e-1529.71Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 S... [more]
TPSD4_ABIGR1.642e-1526.09Delta-selinene synthase OS=Abies grandis GN=ag4 PE... [more]
TPSD2_PICAB2.144e-1528.34Isopimaradiene synthase, chloroplastic OS=Picea ab... [more]
SSS_SALOF2.144e-1527.42(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
GBIS1_ARATH2.144e-1532.34(Z)-gamma-bisabolene synthase 1 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC02007G07SK IF1 Citrus clementina cDNA clone C02007G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288992 ID=CX288992; Name=CX288992; organism=Citrus clementina; type=EST; length=640bp
CTCCATTATGCGAAAGAAGCGATGAAGAATCAAGTTAAGCATTACTTCTT
TGAAGCTAAATGGTATCATCAGAATTATGTTCCGACGGTGGATGAGTACA
TGACGGTTGCATTAATTAGCTCTGCCCACCCAAATTTGTCAACCATATCT
TTTGTTGGCATGGGAGACATTGTAACTAAAGAATCTTTTGAATGGTTATT
CAGCAATCCTAGATCGATTAGGGCTTCTTGTGCAGTTGGCAGACTAATGA
ATGACATGGTGTCACACAAGTTTGAACAAAGCAGAGGGCACGTTGCCTCA
AGCGTTGAGTGTTACATCAACCAATATGGAGCAACAGAAGAGGAAGCATA
CAGTGAGTTCCGGAAACAAGTTTCAAATGCATGGAAGGATATAAATGAGG
AATGCCTGCGCCCAACTCTTGTGCCAGTGCCACTTCTTATGCGAATTCTC
AATCTTACACGAGCTGCAGATGTCGTTTACAAGTATAAAGATGGCTACAC
TGACACCGAAGAGCTGAAAGATTTTATTGCTTCTCTGCTTATTAATCCTG
TGCCCATATGAGCATGATATTAACCTTATGTTTCAACACCCTGCTGGAAA
ATAATTAGTCCATTGCCGTTTCAGCTTGGATGCTTTTTAA
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