CX288992

Overview
NameCX288992
Unique NameCX288992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length640
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: TPSD9_ABIGR (Terpinolene synthase, chloroplastic OS=Abies grandis GN=ag9 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 50/189 (26.46%), Postives = 95/189 (50.26%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQY-GATEEEAYSEFRKQVSNAWKDINEECLRPT-LVPVPLLMRILNLTRAADVVYKYKDGYT-DTEELKDFIASLLINPVPI 558
            L+ A+ A +  +  Y  EA+W    Y+PT +EYM  + +S  +   +    + M   +T    + +    R     C++ RL ND   +K +++RG  AS + CY+ +  G+TEE+A +     V+N  K++N E LR      +       ++ + +   YKY+DG++   +E K+++   ++  VP+
Sbjct:  442 LNDARRAWEAYLDSYMKEAEWISSGYLPTFEEYMETSKVSFGYRIFALQPILTMDVPLTHHILQEIDFPLRFNDLICSILRLKNDTRCYKADRARGEEASCISCYMKENPGSTEEDAINHINAMVNNLIKEVNWELLRQDGTAHIACKKHAFDILKGSLHGYKYRDGFSVANKETKNWVRRTVLESVPL 630          
BLAST of CX288992 vs. ExPASy Swiss-Prot
Match: TPSD2_ABIGR (Myrcene synthase, chloroplastic OS=Abies grandis GN=ag2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.454e-11
Identity = 48/184 (26.09%), Postives = 88/184 (47.83%), Query Frame = 1
Query:    1 LHYAKEAMKNQVKHYFFEAKWYHQNYVPTVDEYMTVALISSAHPNLSTISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYI-NQYGATEEEAYSEFRKQVSNAWKDINEECLRPT-LVPVPLLMRILNLTRAADVVYKYKDGYT-DTEELKDFIASLLI 543
            L+Y ++A +     Y  EAKW    Y+P  +EY     +SSA+   +    + +   +     + +    R    + +  RL  D   +K ++ RG  AS + CY+ +  G+TEE+A +     V++  K++N E LR    +P+       ++TRA   +Y Y+DG++   +E K  +   L+
Sbjct:  439 LNYVRKAWEAYFDSYMEEAKWISNGYLPMFEEYHENGKVSSAYRVATLQPILTLNAWLPDYILKGIDFPSRFNDLASSFLRLRGDTRCYKADRDRGEEASCISCYMKDNPGSTEEDALNHINAMVNDIIKELNWELLRSNDNIPMLAKKHAFDITRALHHLYIYRDGFSVANKETKKLVMETLL 622          
The following BLAST results are available for this feature:
BLAST of CX288992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
TPSD9_ABIGR2.371e-1426.46Terpinolene synthase, chloroplastic OS=Abies grand... [more]
TPSD2_ABIGR2.454e-1126.09Myrcene synthase, chloroplastic OS=Abies grandis G... [more]

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Properties
Property NameValue
Genbank descriptionC02007G07SK IF1 Citrus clementina cDNA clone C02007G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288992 ID=CX288992; Name=CX288992; organism=Citrus clementina; type=EST; length=640bp
CTCCATTATGCGAAAGAAGCGATGAAGAATCAAGTTAAGCATTACTTCTT
TGAAGCTAAATGGTATCATCAGAATTATGTTCCGACGGTGGATGAGTACA
TGACGGTTGCATTAATTAGCTCTGCCCACCCAAATTTGTCAACCATATCT
TTTGTTGGCATGGGAGACATTGTAACTAAAGAATCTTTTGAATGGTTATT
CAGCAATCCTAGATCGATTAGGGCTTCTTGTGCAGTTGGCAGACTAATGA
ATGACATGGTGTCACACAAGTTTGAACAAAGCAGAGGGCACGTTGCCTCA
AGCGTTGAGTGTTACATCAACCAATATGGAGCAACAGAAGAGGAAGCATA
CAGTGAGTTCCGGAAACAAGTTTCAAATGCATGGAAGGATATAAATGAGG
AATGCCTGCGCCCAACTCTTGTGCCAGTGCCACTTCTTATGCGAATTCTC
AATCTTACACGAGCTGCAGATGTCGTTTACAAGTATAAAGATGGCTACAC
TGACACCGAAGAGCTGAAAGATTTTATTGCTTCTCTGCTTATTAATCCTG
TGCCCATATGAGCATGATATTAACCTTATGTTTCAACACCCTGCTGGAAA
ATAATTAGTCCATTGCCGTTTCAGCTTGGATGCTTTTTAA
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