CX288998

Overview
NameCX288998
Unique NameCX288998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length267
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_MICAN (Tryptophan synthase alpha chain OS=Microcystis aeruginosa (strain NIES-843) GN=trpA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.218e-17
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV 250
            +AL++LD  G+D+IEL VPYSDPL DGP +Q+AATR+  RG     +L ++K    ++  P+  FTYY PI  RG+D F+  +
Sbjct:   35 QALRILDRAGADLIELGVPYSDPLADGPVIQSAATRALNRGVKLEDVLEIVKNAQGEVKAPIILFTYYNPIYHRGIDVFLDQI 117          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_SYNY3 (Tryptophan synthase alpha chain OS=Synechocystis sp. (strain PCC 6803) GN=trpA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.572e-16
Identity = 39/83 (46.99%), Postives = 58/83 (69.88%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV 250
            EAL++LD  G+D+IEL VPYSDPL DGP +QAAATR+  +G   + +L++++E    +  P+  FTYY PI  +GV+ F+  +
Sbjct:   35 EALRILDRAGADLIELGVPYSDPLADGPVIQAAATRALQKGVKLDDVLAIVREVHQDIAAPIILFTYYNPIFYQGVEVFLDKI 117          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_SYNP6 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=trpA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.803e-16
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV 250
            +AL  LD  G+D+IEL VPYSDPL DGP +QAAATR+   GT  + +L++LK+   Q+  P+  FTY  PIL RG + F+  +
Sbjct:   35 QALLALDREGADLIELGVPYSDPLADGPVIQAAATRALQAGTRLDDVLALLKDVRSQIKAPIVLFTYCNPILNRGFEAFLDQI 117          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_SYNE7 (Tryptophan synthase alpha chain OS=Synechococcus elongatus (strain PCC 7942) GN=trpA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.803e-16
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV 250
            +AL  LD  G+D+IEL VPYSDPL DGP +QAAATR+   GT  + +L++LK+   Q+  P+  FTY  PIL RG + F+  +
Sbjct:   35 QALLALDREGADLIELGVPYSDPLADGPVIQAAATRALQAGTRLDDVLALLKDVRSQIKAPIVLFTYCNPILNRGFEAFLDQI 117          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_GLOVI (Tryptophan synthase alpha chain OS=Gloeobacter violaceus GN=trpA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.331e-15
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFM 241
            EAL  LD  G+D++EL +PYSDPL DGP +QAAATR+ ARGT   A+L ++    P++  P+  FTY+  IL  G++ F+
Sbjct:   41 EALLTLDRNGADLLELGLPYSDPLADGPTIQAAATRALARGTTPGAVLDLVARLTPELRAPLIVFTYFNLILAVGIEAFV 120          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_CYAA5 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain ATCC 51142) GN=trpA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.965e-15
Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV 250
            +AL++LD+ G+D+IEL VPYSDPL DGP +QAAA+R+  RG     +L+++K     +  P+  F+YY PI  RG++ F+  +
Sbjct:   35 KALRVLDASGADLIELGVPYSDPLADGPVIQAAASRALRRGVKLEDVLNIVKGVQGDIKAPIILFSYYNPIFYRGIEAFLEQI 117          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_GRATL (Tryptophan synthase alpha chain OS=Gracilaria tenuistipitata var. liui GN=trpA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.472e-14
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV 250
            +ALK+LD  G+D+IEL +PYSD L DGP +Q A+  +  +G     +LS+L + +P +  P+  FTYY P+L RGVD F+  +
Sbjct:   33 KALKVLDREGADLIELGIPYSDALADGPIIQEASQAALKQGIYIEQVLSILTKVIPDLHAPIIIFTYYNPVLVRGVDKFICEI 115          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_PROMM (Tryptophan synthase alpha chain OS=Prochlorococcus marinus (strain MIT 9313) GN=trpA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.075e-13
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNF 238
            E L  L+  G+D+IEL +PYSDPL DGP +QAAA+R+ A GT    +L ML +   ++  P+  FTY  P+  RG++ F
Sbjct:   46 EVLLSLEQSGADMIELGIPYSDPLADGPVIQAAASRALASGTTPARVLQMLIDLRGKLSIPVILFTYTNPLFNRGMERF 124          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_SYNS9 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain CC9902) GN=trpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.055e-12
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNF 238
            E L  L + G+D++EL +PYSDPL DGP +QAAA R+ A GT    +L ML     Q+  P+  FTY  P+L  G++ F
Sbjct:   40 EVLLSLQAAGADMVELGMPYSDPLADGPVIQAAAARALAAGTTPKKVLEMLSSLRGQLSIPVILFTYSNPLLNVGMERF 118          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_SYNPX (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain WH8102) GN=trpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.799e-12
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNF 238
            E L  L + G+D++EL +PYSDPL DGP +QAAA R+ A GT    +L ML     Q+  P+  FTY  P+L  G++ F
Sbjct:   40 EVLLSLQNSGADMVELGMPYSDPLADGPVIQAAAARALAAGTTPGKVLEMLTSLKGQLTIPVILFTYSNPLLNVGMEAF 118          
The following BLAST results are available for this feature:
BLAST of CX288998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
TRPA_MICAN9.218e-1746.99Tryptophan synthase alpha chain OS=Microcystis aer... [more]
TRPA_SYNY31.572e-1646.99Tryptophan synthase alpha chain OS=Synechocystis s... [more]
TRPA_SYNP67.803e-1649.40Tryptophan synthase alpha chain OS=Synechococcus s... [more]
TRPA_SYNE77.803e-1649.40Tryptophan synthase alpha chain OS=Synechococcus e... [more]
TRPA_GLOVI1.331e-1548.75Tryptophan synthase alpha chain OS=Gloeobacter vio... [more]
TRPA_CYAA52.965e-1544.58Tryptophan synthase alpha chain OS=Cyanothece sp. ... [more]
TRPA_GRATL1.472e-1444.58Tryptophan synthase alpha chain OS=Gracilaria tenu... [more]
TRPA_PROMM8.075e-1345.57Tryptophan synthase alpha chain OS=Prochlorococcus... [more]
TRPA_SYNS91.055e-1245.57Tryptophan synthase alpha chain OS=Synechococcus s... [more]
TRPA_SYNPX1.799e-1245.57Tryptophan synthase alpha chain OS=Synechococcus s... [more]

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Properties
Property NameValue
Genbank descriptionC02007H01SK IF1 Citrus clementina cDNA clone C02007H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288998 ID=CX288998; Name=CX288998; organism=Citrus clementina; type=EST; length=267bp
AGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGAACTGA
GTGTTCCATATTCAGATCCTTTAACAGATGGCCCAGACATGCAAGCTGCG
GCTACACGATCATGAGCACGAGGAACCAACTGGAATGCAATTCTTTCTAT
GTTGAAAGAGGAGGTTCCTCAAATGTTGTGCCCAATGGCTTCATTTACAT
ATTACAAACCAATTCTGAGGCGAGGCGTTGATAATTTCATGTCCACAGTG
TGAGACATTGAAATGCC
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