CX289002

Overview
NameCX289002
Unique NameCX289002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length455
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig169 contig Ccv1_Contig169:1..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_LISMF (Dihydroorotate dehydrogenase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.483e-13
Identity = 48/150 (32.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCP+    +  G A G D  +  +    +   ATVPV+ K++PN+ DI   A+    +G++G++ INT++  M IDLKT +P       +  GG S  A+ P+A+       +M+       +  + G+GGV+T  D  EF++ GA+
Sbjct:  126 LNISCPN---VKHGGIAFGTDPDVAHRLTKAVKNVATVPVYVKLSPNVADIVSIAQAIEAAGADGLTMINTLLG-MRIDLKTRKPIIA----NGTGGLSGPAIKPVAI-------RMIHQVREVSNIPIIGMGGVQTVDDVLEFLIAGAD 260          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_LISMC (Dihydroorotate dehydrogenase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.483e-13
Identity = 48/150 (32.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCP+    +  G A G D  +  +    +   ATVPV+ K++PN+ DI   A+    +G++G++ INT++  M IDLKT +P       +  GG S  A+ P+A+       +M+       +  + G+GGV+T  D  EF++ GA+
Sbjct:  126 LNISCPN---VKHGGIAFGTDPDVAHRLTKAVKNVATVPVYVKLSPNVADIVSIAQAIEAAGADGLTMINTLLG-MRIDLKTRKPIIA----NGTGGLSGPAIKPVAI-------RMIHQVREVSNIPIIGMGGVQTVDDVLEFLIAGAD 260          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_BACSK (Dihydroorotate dehydrogenase OS=Bacillus clausii (strain KSM-K16) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.483e-13
Identity = 48/150 (32.00%), Postives = 79/150 (52.67%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCP+    ++ G A G    +  +    + A + VPV+ K++PN+ DI   A+    +G++G++ INT++  M ID KT RP       +  GG S  A+ P+AL       +M+       D  + G+GG++T  D  EF+L GA+
Sbjct:  126 LNISCPN---VKQGGIAFGTVPEIAAELTKEVKAVSAVPVYVKLSPNVADIVAIAKAIEKAGADGLAMINTLLG-MRIDAKTRRPVLA----NQYGGLSGAAIKPVAL-------RMIHQVSQQVDIPIIGMGGIQTAEDVIEFLLAGAS 260          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_AZOPC (Dihydroorotate dehydrogenase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.483e-13
Identity = 50/150 (33.33%), Postives = 78/150 (52.00%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCP+    ++ G A G +C+   +    +       +  K++PN+TDITE A+   I+G++ VS INT++  M ID+K  +P       +  GG S   + PIAL  V    K++K         + G+GG+    DA EFIL GA+
Sbjct:  126 LNISCPN---MKQGGMAFGTNCSNASEIVNAVRKVYHKILIVKLSPNVTDITEIAKAVEIAGADAVSLINTLIG-MAIDIKIKKPILS----TVTGGLSGPCIKPIALRMVYQTYKIVK-------IPIIGLGGISNSDDAIEFILAGAS 260          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_LISMH (Dihydroorotate dehydrogenase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.941e-13
Identity = 48/150 (32.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCP+    +  G A G D  +  +    +   ATVPV+ K++PN+ DI   A+    +G++G++ INT++  M IDLKT +P       +  GG S  A+ P+A+       +M+       +  + G+GGV+T  D  EF++ GA+
Sbjct:  126 LNISCPN---VKHGGIAFGTDPEVAHRLTKAVKNVATVPVYVKLSPNVADIVSIAQAIEAAGADGLTMINTLLG-MRIDLKTRKPIIA----NGTGGLSGPAIKPVAI-------RMIHQVRAVSNIPIIGMGGVQTVDDVLEFLIAGAD 260          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_GEOSM (Dihydroorotate dehydrogenase OS=Geobacter sp. (strain M21) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.941e-13
Identity = 49/149 (32.89%), Postives = 75/149 (50.34%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGA 449
            VN SCP+    ++ G   G D    ++    +    + P+  K++PN+TD+   A+    +G++ +S INT+   M IDL+  RP       +  GG S  A+ P+AL  V  + K +K         L GIGG+  G DA EF+L GA
Sbjct:  128 VNISCPN---VKQGGIVFGTDPGAAQEVVRLVKKNTSKPMIVKLSPNVTDVVVMAKACADAGADALSLINTLTG-MAIDLERRRPVLA----NVTGGLSGPAIKPVALRMVWQVGKAVK-------LPLIGIGGIMNGRDALEFMLAGA 261          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRDB_LACLA (Dihydroorotate dehydrogenase B, catalytic subunit OS=Lactococcus lactis subsp. lactis GN=pyrDB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.941e-13
Identity = 48/150 (32.00%), Postives = 79/150 (52.67%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCP+    +  G A G D  +         A + VP++ K++PN+TDI   A+    +G++G++ INT+M V   DLKT +P       +  GG S  A+ P+AL  +  +A+++       D  + G+GGVE+  D  E  + GA+
Sbjct:  131 LNISCPN---VKHGGQAFGTDPDVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVR-FDLKTRKPVLA----NITGGLSGPAIKPVALKLIHQVAQVV-------DIPIIGMGGVESAQDVLEMYMAGAS 265          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_SOLUE (Dihydroorotate dehydrogenase OS=Solibacter usitatus (strain Ellin6076) GN=pyrD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.760e-13
Identity = 55/153 (35.95%), Postives = 81/153 (52.94%), Query Frame = 3
Query:    3 VNFSCP---HGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCP   HG      G     D  LL +        AT P+  K++PN++ I   ARVA  SG++ +S +NT++S + ID +T RP     G+   GG S  A+ PIAL  V   A+ ++         + G+GG+ TG DAAEF++ GA+
Sbjct:  127 LNVSCPNTAHG------GIYFSNDPVLLAEVVTAAKRVATRPLIVKLSPNVSAIEPLARVAEESGADALSLVNTVIS-LAIDARTRRPR-IGAGF---GGLSGPAIKPIALRFVYQAARAVR-------IPVIGLGGIATGEDAAEFLIAGAS 261          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_LISIN (Dihydroorotate dehydrogenase OS=Listeria innocua GN=pyrD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.760e-13
Identity = 47/150 (31.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCP+    +  G A G D  +  +    + + A+VPV+ K++PN+ DI   A+    +G++G++ INT++  M IDLKT +P       +  GG S  A+ P+A+       +M+       +  + G+GGV+T  D  EF++ GA+
Sbjct:  126 LNISCPN---VKHGGIAFGTDPEVAHRLTKAVKSVASVPVYVKLSPNVADIISIAQAIEAAGADGLTMINTLLG-MRIDLKTRKPVIA----NGTGGLSGPAIKPVAI-------RMIHQVRAVSNIPIIGMGGVQTVDDVLEFLIAGAD 260          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRDB_ENTFA (Dihydroorotate dehydrogenase B, catalytic subunit OS=Enterococcus faecalis GN=pyrDB PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 7.760e-13
Identity = 48/150 (32.00%), Postives = 77/150 (51.33%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCP+    +  G A G D  +  Q    +   A+VP++ K++PN+TDI   A+     G++G S INT++  M IDLKT +P       +  GG S  A+ P+A+  +  +A +           + G+GGV+T  D  E  + GA+
Sbjct:  129 LNISCPN---VKHGGIAFGTDPEVAFQLTQAVKKVASVPIYVKLSPNVTDIVPIAQAIEAGGADGFSMINTLLG-MRIDLKTRKPILA----NQTGGLSGPAIKPVAIRLIRQVASV-------SQLPIIGMGGVQTVDDVLEMFMAGAS 263          
The following BLAST results are available for this feature:
BLAST of CX289002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
PYRD_LISMF3.483e-1332.00Dihydroorotate dehydrogenase OS=Listeria monocytog... [more]
PYRD_LISMC3.483e-1332.00Dihydroorotate dehydrogenase OS=Listeria monocytog... [more]
PYRD_BACSK3.483e-1332.00Dihydroorotate dehydrogenase OS=Bacillus clausii (... [more]
PYRD_AZOPC3.483e-1333.33Dihydroorotate dehydrogenase OS=Azobacteroides pse... [more]
PYRD_LISMH5.941e-1332.00Dihydroorotate dehydrogenase OS=Listeria monocytog... [more]
PYRD_GEOSM5.941e-1332.89Dihydroorotate dehydrogenase OS=Geobacter sp. (str... [more]
PYRDB_LACLA5.941e-1332.00Dihydroorotate dehydrogenase B, catalytic subunit ... [more]
PYRD_SOLUE7.760e-1335.95Dihydroorotate dehydrogenase OS=Solibacter usitatu... [more]
PYRD_LISIN7.760e-1331.33Dihydroorotate dehydrogenase OS=Listeria innocua G... [more]
PYRDB_ENTFA7.760e-1332.00Dihydroorotate dehydrogenase B, catalytic subunit ... [more]

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Properties
Property NameValue
Genbank descriptionC02007H05SK IF1 Citrus clementina cDNA clone C02007H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289002 ID=CX289002; Name=CX289002; organism=Citrus clementina; type=EST; length=455bp
AAGTTAATTTTTCATGTCCACATGGCATGCCGGAACGTAAAATGGGGGCT
GCTGTTGGCCAAGATTGTACGCTGTTGGAACAATTTTGTGGTTGGATAAA
TGCAAAAGCTACTGTTCCTGTGTGGGCAAAGATGACTCCTAACATTACTG
ACATTACAGAACCAGCTAGGGTGGCTCTCATATCAGGAAGTGAGGGAGTA
TCTGCTATTAACACAATCATGAGCGTCATGGGAATTGATCTGAAAACTTT
GCGTCCTGAACCTTGTGTGGAGGGATACTCTACACCTGGGGGCTATTCTT
GCAAGGCAGTCCATCCTATTGCATTATGAAAAGTATTGAGTATAGCCAAA
ATGATGAAGTCGGAATTCAATGACAAGGATTACTCACTTTCTGGCATTGG
AGGTGTAGAAACTGGTGGCGATGCTGCCGAATTTATTCTTCTTGGTGCAA
ATACT
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