CX289002
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_LISMF (Dihydroorotate dehydrogenase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=pyrD PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.483e-13 Identity = 48/150 (32.00%), Postives = 80/150 (53.33%), Query Frame = 3 Query: 3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452 +N SCP+ + G A G D + + + ATVPV+ K++PN+ DI A+ +G++G++ INT++ M IDLKT +P + GG S A+ P+A+ +M+ + + G+GGV+T D EF++ GA+ Sbjct: 126 LNISCPN---VKHGGIAFGTDPDVAHRLTKAVKNVATVPVYVKLSPNVADIVSIAQAIEAAGADGLTMINTLLG-MRIDLKTRKPIIA----NGTGGLSGPAIKPVAI-------RMIHQVREVSNIPIIGMGGVQTVDDVLEFLIAGAD 260
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_LISMC (Dihydroorotate dehydrogenase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=pyrD PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.483e-13 Identity = 48/150 (32.00%), Postives = 80/150 (53.33%), Query Frame = 3 Query: 3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452 +N SCP+ + G A G D + + + ATVPV+ K++PN+ DI A+ +G++G++ INT++ M IDLKT +P + GG S A+ P+A+ +M+ + + G+GGV+T D EF++ GA+ Sbjct: 126 LNISCPN---VKHGGIAFGTDPDVAHRLTKAVKNVATVPVYVKLSPNVADIVSIAQAIEAAGADGLTMINTLLG-MRIDLKTRKPIIA----NGTGGLSGPAIKPVAI-------RMIHQVREVSNIPIIGMGGVQTVDDVLEFLIAGAD 260
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_BACSK (Dihydroorotate dehydrogenase OS=Bacillus clausii (strain KSM-K16) GN=pyrD PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.483e-13 Identity = 48/150 (32.00%), Postives = 79/150 (52.67%), Query Frame = 3 Query: 3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452 +N SCP+ ++ G A G + + + A + VPV+ K++PN+ DI A+ +G++G++ INT++ M ID KT RP + GG S A+ P+AL +M+ D + G+GG++T D EF+L GA+ Sbjct: 126 LNISCPN---VKQGGIAFGTVPEIAAELTKEVKAVSAVPVYVKLSPNVADIVAIAKAIEKAGADGLAMINTLLG-MRIDAKTRRPVLA----NQYGGLSGAAIKPVAL-------RMIHQVSQQVDIPIIGMGGIQTAEDVIEFLLAGAS 260
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_AZOPC (Dihydroorotate dehydrogenase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=pyrD PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.483e-13 Identity = 50/150 (33.33%), Postives = 78/150 (52.00%), Query Frame = 3 Query: 3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452 +N SCP+ ++ G A G +C+ + + + K++PN+TDITE A+ I+G++ VS INT++ M ID+K +P + GG S + PIAL V K++K + G+GG+ DA EFIL GA+ Sbjct: 126 LNISCPN---MKQGGMAFGTNCSNASEIVNAVRKVYHKILIVKLSPNVTDITEIAKAVEIAGADAVSLINTLIG-MAIDIKIKKPILS----TVTGGLSGPCIKPIALRMVYQTYKIVK-------IPIIGLGGISNSDDAIEFILAGAS 260
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_LISMH (Dihydroorotate dehydrogenase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=pyrD PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.941e-13 Identity = 48/150 (32.00%), Postives = 80/150 (53.33%), Query Frame = 3 Query: 3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452 +N SCP+ + G A G D + + + ATVPV+ K++PN+ DI A+ +G++G++ INT++ M IDLKT +P + GG S A+ P+A+ +M+ + + G+GGV+T D EF++ GA+ Sbjct: 126 LNISCPN---VKHGGIAFGTDPEVAHRLTKAVKNVATVPVYVKLSPNVADIVSIAQAIEAAGADGLTMINTLLG-MRIDLKTRKPIIA----NGTGGLSGPAIKPVAI-------RMIHQVRAVSNIPIIGMGGVQTVDDVLEFLIAGAD 260
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_GEOSM (Dihydroorotate dehydrogenase OS=Geobacter sp. (strain M21) GN=pyrD PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.941e-13 Identity = 49/149 (32.89%), Postives = 75/149 (50.34%), Query Frame = 3 Query: 3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGA 449 VN SCP+ ++ G G D ++ + + P+ K++PN+TD+ A+ +G++ +S INT+ M IDL+ RP + GG S A+ P+AL V + K +K L GIGG+ G DA EF+L GA Sbjct: 128 VNISCPN---VKQGGIVFGTDPGAAQEVVRLVKKNTSKPMIVKLSPNVTDVVVMAKACADAGADALSLINTLTG-MAIDLERRRPVLA----NVTGGLSGPAIKPVALRMVWQVGKAVK-------LPLIGIGGIMNGRDALEFMLAGA 261
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRDB_LACLA (Dihydroorotate dehydrogenase B, catalytic subunit OS=Lactococcus lactis subsp. lactis GN=pyrDB PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.941e-13 Identity = 48/150 (32.00%), Postives = 79/150 (52.67%), Query Frame = 3 Query: 3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452 +N SCP+ + G A G D + A + VP++ K++PN+TDI A+ +G++G++ INT+M V DLKT +P + GG S A+ P+AL + +A+++ D + G+GGVE+ D E + GA+ Sbjct: 131 LNISCPN---VKHGGQAFGTDPDVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVR-FDLKTRKPVLA----NITGGLSGPAIKPVALKLIHQVAQVV-------DIPIIGMGGVESAQDVLEMYMAGAS 265
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_SOLUE (Dihydroorotate dehydrogenase OS=Solibacter usitatus (strain Ellin6076) GN=pyrD PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 7.760e-13 Identity = 55/153 (35.95%), Postives = 81/153 (52.94%), Query Frame = 3 Query: 3 VNFSCP---HGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452 +N SCP HG G D LL + AT P+ K++PN++ I ARVA SG++ +S +NT++S + ID +T RP G+ GG S A+ PIAL V A+ ++ + G+GG+ TG DAAEF++ GA+ Sbjct: 127 LNVSCPNTAHG------GIYFSNDPVLLAEVVTAAKRVATRPLIVKLSPNVSAIEPLARVAEESGADALSLVNTVIS-LAIDARTRRPR-IGAGF---GGLSGPAIKPIALRFVYQAARAVR-------IPVIGLGGIATGEDAAEFLIAGAS 261
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_LISIN (Dihydroorotate dehydrogenase OS=Listeria innocua GN=pyrD PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 7.760e-13 Identity = 47/150 (31.33%), Postives = 81/150 (54.00%), Query Frame = 3 Query: 3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452 +N SCP+ + G A G D + + + + A+VPV+ K++PN+ DI A+ +G++G++ INT++ M IDLKT +P + GG S A+ P+A+ +M+ + + G+GGV+T D EF++ GA+ Sbjct: 126 LNISCPN---VKHGGIAFGTDPEVAHRLTKAVKSVASVPVYVKLSPNVADIISIAQAIEAAGADGLTMINTLLG-MRIDLKTRKPVIA----NGTGGLSGPAIKPVAI-------RMIHQVRAVSNIPIIGMGGVQTVDDVLEFLIAGAD 260
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRDB_ENTFA (Dihydroorotate dehydrogenase B, catalytic subunit OS=Enterococcus faecalis GN=pyrDB PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 7.760e-13 Identity = 48/150 (32.00%), Postives = 77/150 (51.33%), Query Frame = 3 Query: 3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452 +N SCP+ + G A G D + Q + A+VP++ K++PN+TDI A+ G++G S INT++ M IDLKT +P + GG S A+ P+A+ + +A + + G+GGV+T D E + GA+ Sbjct: 129 LNISCPN---VKHGGIAFGTDPEVAFQLTQAVKKVASVPIYVKLSPNVTDIVPIAQAIEAGGADGFSMINTLLG-MRIDLKTRKPILA----NQTGGLSGPAIKPVAIRLIRQVASV-------SQLPIIGMGGVQTVDDVLEMFMAGAS 263 The following BLAST results are available for this feature:
BLAST of CX289002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289002 ID=CX289002; Name=CX289002; organism=Citrus clementina; type=EST; length=455bpback to top |