CX289002

Overview
NameCX289002
Unique NameCX289002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length455
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig169 contig Ccv1_Contig169:1..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_BACTN (Dihydroorotate dehydrogenase OS=Bacteroides thetaiotaomicron GN=pyrD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.949e-12
Identity = 53/150 (35.33%), Postives = 77/150 (51.33%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCP+    ++ G A G       +    + A     +  K++PN+TDITE AR A  SG++ VS INT++  M ID +  RP       +  GG S  AV PIAL  V  +AK +       +  + G+GG+    DA EF+L GA+
Sbjct:  126 LNISCPN---VKQGGMAFGVSAKGASEVVKAVRAAYKKTLIVKLSPNVTDITEIARAAEESGADSVSLINTLLG-MAIDAERKRPILS----TVTGGMSGAAVKPIALRMVWQVAKAV-------NIPVIGLGGIMNWKDAVEFMLAGAS 260          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_ANATD (Dihydroorotate dehydrogenase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=pyrD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 49/149 (32.89%), Postives = 78/149 (52.35%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGA 449
            VN SCP+    ++ G   G+D   + +    +   A+ P+  K+TPN+TDIT+ A  A  +G++ +S INT+ S M ID++T +P   +      GG S  A+ PIA+       +M+   F      + G+GG+    DA EF + GA
Sbjct:  123 VNLSCPN---VKEGGMVFGKDPKKVYEITKSVKDVASCPIIVKLTPNVTDITQLAVAAENAGADAISLINTV-SAMAIDIETRKPLIKM----VTGGLSGPAIKPIAV-------RMVYECFKKVRIPIIGMGGIMNYKDAIEFFIAGA 256          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_PEDPA (Dihydroorotate dehydrogenase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=pyrD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.030e-12
Identity = 53/150 (35.33%), Postives = 77/150 (51.33%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKA-TVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGA 449
            VN SCP+     K G A G D  ++E     I A     PV+ K+TP +T+I   A  A   G++G+  INT+M  M IDL+T +P       +  GG S KA+HPIA+       +M+       +  + G+GGV +  DA E ++ GA
Sbjct:  128 VNISCPN---VAKGGLAFGTDPVVVEDMTRRIKAVVPNKPVFMKLTPGVTEIVPIALAAERGGADGLVMINTLMG-MEIDLETRKPRLS----NGTGGLSGKAIHPIAV-------RMIHQVREVTNLPIIGVGGVFSAKDALELMVAGA 262          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_GEOSF (Dihydroorotate dehydrogenase OS=Geobacter sp. (strain FRC-32) GN=pyrD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.030e-12
Identity = 47/149 (31.54%), Postives = 75/149 (50.34%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGA 449
            VN SCP+    ++ G   G D     +  G +    + P+  K++PN+TD+   A   + +G++ +S INT+   M IDL+  RP       +  GG S  A+ P+AL  V  +++ M          + GIGG+ +  DA EF+L GA
Sbjct:  128 VNISCPN---VKQGGIVFGTDPNAAAEVVGLVRRSTSKPLIIKLSPNVTDVVRMADACVNAGADALSLINTLTG-MAIDLQKRRPILA----NITGGLSGPAIKPVALRMVWQVSQAMA-------VPIIGIGGIMSATDALEFMLAGA 261          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_FUSNN (Dihydroorotate dehydrogenase OS=Fusobacterium nucleatum subsp. nucleatum GN=pyrD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.030e-12
Identity = 45/150 (30.00%), Postives = 79/150 (52.67%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCP+    +  G   G D  +       + A ++VPV+ K++PN+TDI   A+     G++G++ INT++ ++ +D KT +P       +T GG S  A+ P+A+  V  +A+ +       +  + G+GGV    D  +FI  GA+
Sbjct:  127 LNISCPN---VKHGGIQFGTDPNVARNLTEKVKAVSSVPVYVKLSPNVTDIVAMAKAVETGGADGLTMINTLVGIV-LDRKTGKPIIA----NTTGGLSGPAIRPVAIRMVYQVAQAV-------NIPIIGMGGVMDEWDVIDFISAGAS 261          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_BACCL (Dihydroorotate dehydrogenase, catalytic subunit OS=Bacillus caldolyticus GN=pyrD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 47/150 (31.33%), Postives = 78/150 (52.00%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCP+    +K G A G    +  +    +   A VPV+  ++PN+TDI   A+    +G++G++ INT++  M ID+KT RP       +  GG S  AV PIA+  +  +++ +          + G+GG++T  D  EF   GA+
Sbjct:  126 LNISCPN---VKKGGIAFGTVPDVAAELTRLVKEVAAVPVYVNVSPNVTDIVAMAKAIEQAGADGLTMINTLVG-MRIDVKTGRPILA----NGTGGLSGPAVKPIAIRMIYEVSQAV-------SIPIIGMGGIQTAEDVLEFFYAGAS 260          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRDB_LACLM (Dihydroorotate dehydrogenase B, catalytic subunit OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=pyrDB PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 47/150 (31.33%), Postives = 77/150 (51.33%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCP+    +  G A G D  +         A + VP++ K++PN+TDI   A+    +G++G++ INT+M V   DLKT +P       +  GG S  A+ P+AL  +  +A+++       D  + G+GGV    D  E  + GA+
Sbjct:  131 LNISCPN---VKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVR-FDLKTRQPILA----NITGGLSGPAIKPVALKLIHQVAQVV-------DIPIIGMGGVANAQDVLEMYMAGAS 265          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_PELPD (Dihydroorotate dehydrogenase OS=Pelobacter propionicus (strain DSM 2379) GN=pyrD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 48/150 (32.00%), Postives = 75/150 (50.00%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            VN SCP+    ++ G   G D     Q           P+  K++PN+TD+   A+    +G++ +S INT+   M IDLK+ +P       +  GG S  A+ P+AL  V  +++ ++         L GIGG+ +  DA EFIL GA+
Sbjct:  127 VNISCPN---VKQGGIVFGTDPACAGQVVAACRRATKKPLIVKLSPNVTDVVVMAQACADAGADALSLINTLTG-MAIDLKSRKPVLA----NITGGLSGPAIKPVALRMVWQVSRAVQ-------VPLIGIGGITSATDALEFILAGAS 261          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_GEOMG (Dihydroorotate dehydrogenase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=pyrD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 51/149 (34.23%), Postives = 73/149 (48.99%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGA 449
            +N SCP+    +  G   G +          +      PV  K++PN+TDI E A     + ++ +S INT+   M IDLK+ RP       +  GG S  AV P+AL  V  +AK +K         + GIGG+ +G DA EF+L GA
Sbjct:  128 INISCPN---VKHGGIVFGTEPKAAYSVVKAVREATIKPVIVKLSPNVTDIVEMAWACADAEADALSLINTLTG-MAIDLKSRRPILA----NVTGGLSGPAVKPVALRMVWQVAKAVK-------IPVIGIGGIMSGTDALEFMLAGA 261          
BLAST of CX289002 vs. ExPASy Swiss-Prot
Match: PYRD_BACWK (Dihydroorotate dehydrogenase OS=Bacillus weihenstephanensis (strain KBAB4) GN=pyrD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 45/150 (30.00%), Postives = 79/150 (52.67%), Query Frame = 3
Query:    3 VNFSCPHGMPERKMGAAVGQDCTLLEQFCGWINAKATVPVWAKMTPNITDITEPARVALISGSEGVSAINTIMSVMGIDLKTLRPEPCVEGYSTPGGYSCKAVHPIAL*KVLSIAKMMKSEFNDKDYSLSGIGGVETGGDAAEFILLGAN 452
            +N SCP+    +  G A G +  +       +   + VPV+ K++PN+ +I E A+    +G++G++ INT++  M +DLKT +P       +  GG S  A+ P+AL  V  +++ +       +  + G+GG+ET  D  EF   GA+
Sbjct:  126 LNISCPN---VKTGGIAFGTNPEIAADLTKRVKEVSEVPVYVKLSPNVANIVEIAKAIENAGADGLTMINTLLG-MRLDLKTAKPILA----NRTGGLSGPAIKPVALRMVHEVSQAV-------NIPIIGMGGIETAEDVIEFFYAGAS 260          
The following BLAST results are available for this feature:
BLAST of CX289002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
PYRD_BACTN2.949e-1235.33Dihydroorotate dehydrogenase OS=Bacteroides thetai... [more]
PYRD_ANATD3.851e-1232.89Dihydroorotate dehydrogenase OS=Anaerocellum therm... [more]
PYRD_PEDPA5.030e-1235.33Dihydroorotate dehydrogenase OS=Pediococcus pentos... [more]
PYRD_GEOSF5.030e-1231.54Dihydroorotate dehydrogenase OS=Geobacter sp. (str... [more]
PYRD_FUSNN5.030e-1230.00Dihydroorotate dehydrogenase OS=Fusobacterium nucl... [more]
PYRD_BACCL6.569e-1231.33Dihydroorotate dehydrogenase, catalytic subunit OS... [more]
PYRDB_LACLM6.569e-1231.33Dihydroorotate dehydrogenase B, catalytic subunit ... [more]
PYRD_PELPD8.579e-1232.00Dihydroorotate dehydrogenase OS=Pelobacter propion... [more]
PYRD_GEOMG8.579e-1234.23Dihydroorotate dehydrogenase OS=Geobacter metallir... [more]
PYRD_BACWK8.579e-1230.00Dihydroorotate dehydrogenase OS=Bacillus weihenste... [more]

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Properties
Property NameValue
Genbank descriptionC02007H05SK IF1 Citrus clementina cDNA clone C02007H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289002 ID=CX289002; Name=CX289002; organism=Citrus clementina; type=EST; length=455bp
AAGTTAATTTTTCATGTCCACATGGCATGCCGGAACGTAAAATGGGGGCT
GCTGTTGGCCAAGATTGTACGCTGTTGGAACAATTTTGTGGTTGGATAAA
TGCAAAAGCTACTGTTCCTGTGTGGGCAAAGATGACTCCTAACATTACTG
ACATTACAGAACCAGCTAGGGTGGCTCTCATATCAGGAAGTGAGGGAGTA
TCTGCTATTAACACAATCATGAGCGTCATGGGAATTGATCTGAAAACTTT
GCGTCCTGAACCTTGTGTGGAGGGATACTCTACACCTGGGGGCTATTCTT
GCAAGGCAGTCCATCCTATTGCATTATGAAAAGTATTGAGTATAGCCAAA
ATGATGAAGTCGGAATTCAATGACAAGGATTACTCACTTTCTGGCATTGG
AGGTGTAGAAACTGGTGGCGATGCTGCCGAATTTATTCTTCTTGGTGCAA
ATACT
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