CX289006

Overview
NameCX289006
Unique NameCX289006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: YB68_SCHPO (Dynamin-like protein C12C2.08 OS=Schizosaccharomyces pombe GN=SPBC12C2.08 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.821e-38
Identity = 75/214 (35.05%), Postives = 135/214 (63.08%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQ-GALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P LAK L+ +LV HI+  LP +K+R+S+ +    ++  +YG+   S   Q G +LL  +++++  F + ++G +  + T ELSGGAR++ IF ++F  +L  +DP ++L+  DIRTAI N+TG ++ LF+ ++ F++L++ Q+  L  P  QC   +Y+EL+KI H+   +++  FP L+  + E + + LRE L P+ + +  +I ++  YIN
Sbjct:  309 PYLAKTLSNLLVSHIRERLPDIKARLSTLISQTQQQLNNYGDFKLSDQSQRGIILLQAMNRFANTFIASIDGNSSNIPTKELSGGARLYSIFNNVFTTALNSIDPLQNLSTVDIRTAILNSTGSRATLFLSEMAFDILVKPQLNLLAAPCHQCVELVYEELMKICHYSGDSDISHFPKLQTALVETVSDLLRENLTPTYSFVESLIAIQSAYIN 522          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: VPS1_YEAST (Vacuolar protein sorting-associated protein 1 OS=Saccharomyces cerevisiae GN=VPS1 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.553e-34
Identity = 74/214 (34.58%), Postives = 128/214 (59.81%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVN-ELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P LAKKLN IL+ HI+  LP +K++I + L     E  + G  T   A   +++L++++ +S  ++ +++G+ +E+S+ ELSGGARI Y+F   F   ++ +DP + + D DIRT + N++G   +LFV    FEVL+++QI R  +PSL+    ++DEL+++    +   +  R+P LR+ +      FL++   P+   +  II+ E  YIN
Sbjct:  317 PYLAKKLNSILLHHIRQTLPEIKAKIEATLKKYQNELINLGPETMDSAS--SVVLSMITDFSNEYAGILDGEAKELSSQELSGGARISYVFHETFKNGVDSLDPFDQIKDSDIRTIMYNSSGSAPSLFVGTEAFEVLVKQQIRRFEEPSLRLVTLVFDELVRMLKQIISQPKYSRYPALREAISNQFIQFLKDATIPTNEFVVDIIKAEQTYIN 528          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYN1_HUMAN (Dynamin-1 OS=Homo sapiens GN=DNM1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.057e-30
Identity = 70/214 (32.71%), Postives = 123/214 (57.48%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT-ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P L K LNQ L  HI+  LPGL++++ S L+S+ KE   Y     +  A +   LL ++ +++  F   +EG  +++ T ELSGGARI+ IF   F   L +++  E     +I  AI+N  G ++ LF PD+ FE ++++Q+ ++ +P L+C   +  ELI     C   +LQ++P LR+ M+ ++   +RE    ++  +  +I++E+ Y+N
Sbjct:  275 PYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDMAFETIVKKQVKKIREPCLKCVDMVISELISTVRQC-TKKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMN 487          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYN1_MOUSE (Dynamin-1 OS=Mus musculus GN=Dnm1 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.183e-29
Identity = 70/214 (32.71%), Postives = 123/214 (57.48%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT-ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P L K LNQ L  HI+  LPGL++++ S L+S+ KE   Y     +  A +   LL ++ +++  F   +EG  +++ T ELSGGARI+ IF   F   L +++  E     +I  AI+N  G ++ LF PD+ FE ++++Q+ ++ +P L+C   +  ELI     C   +LQ++P LR+ M+ ++   +RE    ++  +  +I++E+ Y+N
Sbjct:  275 PYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDMAFETIVKKQVKKIREPCLKCVDMVISELISTVRQC-TKKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMN 487          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYN1_RAT (Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 70/214 (32.71%), Postives = 122/214 (57.01%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT-ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P L K LNQ L  HI+  LPGL++++ S L+S+ KE   Y     +  A +   LL ++ +++  F   +EG  +++ T ELSGGARI+ IF   F   L +++  E     +I  AI+N  G ++ LF PD+ FE  +++Q+ +L +PS++C   +  EL      C   +LQ++P LR+ M+ ++   +RE    ++  +  +I++E+ Y+N
Sbjct:  275 PYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKC-SEKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMN 487          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYN1_BOVIN (Dynamin-1 OS=Bos taurus GN=DNM1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 70/214 (32.71%), Postives = 122/214 (57.01%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT-ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P L K LNQ L  HI+  LPGL++++ S L+S+ KE   Y     +  A +   LL ++ +++  F   +EG  +++ T ELSGGARI+ IF   F   L +++  E     +I  AI+N  G ++ LF PD+ FE  +++Q+ +L +PS++C   +  EL      C   +LQ++P LR+ M+ ++   +RE    ++  +  +I++E+ Y+N
Sbjct:  275 PYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTATIRKC-SEKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMN 487          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYN2_HUMAN (Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.308e-28
Identity = 70/214 (32.71%), Postives = 118/214 (55.14%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT-ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P L K LNQ L  HI+  LP L+S++ S L+S+ KE   Y     +    +   LL ++ ++   F   +EG  +++ T ELSGGARI+ IF   F   L +++  E     +I  AI+N  G ++ LF PD+ FE ++++Q+ +L +P L+C   +  ELI     C  ++L  +P LR+  + ++  ++RE    ++  I  +I++E  YIN
Sbjct:  275 PHLQKTLNQQLTNHIRESLPALRSKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELSGGARINRIFHERFPFELVKMEFDEKDLRREISYAIKNIHGVRTGLFTPDLAFEAIVKKQVVKLKEPCLKCVDLVIQELINTVRQC-TSKLSSYPRLREETERIVTTYIREREGRTKDQILLLIDIEQSYIN 487          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYN2_BOVIN (Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.308e-28
Identity = 70/214 (32.71%), Postives = 118/214 (55.14%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT-ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P L K LNQ L  HI+  LP L+S++ S L+S+ KE   Y     +    +   LL ++ ++   F   +EG  +++ T ELSGGARI+ IF   F   L +++  E     +I  AI+N  G ++ LF PD+ FE ++++Q+ +L +P L+C   +  ELI     C  ++L  +P LR+  + ++  ++RE    ++  I  +I++E  YIN
Sbjct:  275 PHLQKTLNQQLTNHIRESLPALRSKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELSGGARINRIFHERFPFELVKMEFDEKDLRREISYAIKNIHGVRTGLFTPDLAFEAIVKKQVVKLKEPCLKCVDLVIQELINTVRQC-TSKLSSYPRLREETERIVTTYIREREGRTKDQILLLIDIEQSYIN 487          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYN2_RAT (Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.231e-28
Identity = 70/214 (32.71%), Postives = 118/214 (55.14%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT-ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P L K LNQ L  HI+  LP L+S++ S L+S+ KE   Y     +    +   LL ++ ++   F   +EG  +++ T ELSGGARI+ IF   F   L +++  E     +I  AI+N  G ++ LF PD+ FE ++++Q+ +L +P L+C   +  ELI     C  ++L  +P LR+  + ++  ++RE    ++  I  +I++E  YIN
Sbjct:  275 PHLQKTLNQQLTNHIRESLPTLRSKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELSGGARINRIFHERFPFELVKMEFDEKDLRREISYAIKNIHGVRTGLFTPDLAFEAIVKKQVVKLKEPCLKCVDLVIQELISTVRQC-TSKLSSYPRLREETERIVTTYIREREGRTKDQILLLIDIEQSYIN 487          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYN2_MOUSE (Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.231e-28
Identity = 70/214 (32.71%), Postives = 118/214 (55.14%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT-ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P L K LNQ L  HI+  LP L+S++ S L+S+ KE   Y     +    +   LL ++ ++   F   +EG  +++ T ELSGGARI+ IF   F   L +++  E     +I  AI+N  G ++ LF PD+ FE ++++Q+ +L +P L+C   +  ELI     C  ++L  +P LR+  + ++  ++RE    ++  I  +I++E  YIN
Sbjct:  275 PHLQKTLNQQLTNHIRESLPTLRSKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELSGGARINRIFHERFPFELVKMEFDEKDLRREISYAIKNIHGVRTGLFTPDLAFEAIVKKQVVKLKEPCLKCVDLVIQELISTVRQC-TSKLSSYPRLREETERIVTTYIREREGRTKDQILLLIDIEQSYIN 487          
The following BLAST results are available for this feature:
BLAST of CX289006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
YB68_SCHPO1.821e-3835.05Dynamin-like protein C12C2.08 OS=Schizosaccharomyc... [more]
VPS1_YEAST3.553e-3434.58Vacuolar protein sorting-associated protein 1 OS=S... [more]
DYN1_HUMAN9.057e-3032.71Dynamin-1 OS=Homo sapiens GN=DNM1 PE=1 SV=2[more]
DYN1_MOUSE1.183e-2932.71Dynamin-1 OS=Mus musculus GN=Dnm1 PE=1 SV=2[more]
DYN1_RAT5.870e-2932.71Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2[more]
DYN1_BOVIN5.870e-2932.71Dynamin-1 OS=Bos taurus GN=DNM1 PE=2 SV=1[more]
DYN2_HUMAN1.308e-2832.71Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2[more]
DYN2_BOVIN1.308e-2832.71Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1[more]
DYN2_RAT2.231e-2832.71Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1[more]
DYN2_MOUSE2.231e-2832.71Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC02007H10SK IF1 Citrus clementina cDNA clone C02007H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289006 ID=CX289006; Name=CX289006; organism=Citrus clementina; type=EST; length=643bp
GTTCCTCAGTTGGCAAAGAAGTTGAACCAGATTCTTGTACAACATATCAA
GGCTATACTTCCTGGGTTGAAGTCACGCATTAGCTCTGCATTAGTTTCTG
TTGCAAAGGAGCATGCAAGCTACGGGGAAATCACAGAATCAAAGGCTGGT
CAGGGAGCTCTACTCCTGAATATTCTTTCTAAATACTCCGAAGCATTTTC
TTCAATGGTGGAGGGAAAGAATGAAGAAATGTCAACATCTGAGCTTTCTG
GCGGGGCACGAATTCACTATATTTTTCAGTCAATCTTTGTGAAGAGCTTA
GAGGAGGTTGATCCCTGTGAGGACTTGACTGACGATGACATTCGAACTGC
TATTCAGAATGCAACTGGTCCCAAATCTGCACTATTTGTACCAGACGTGC
CGTTCGAAGTTCTTATTCGAAGGCAAATTGCTCGCTTGTTGGATCCTAGT
CTTCAGTGTGCGAGGTTCATATATGATGAGTTAATAAAGATTAGCCATCA
CTGTCTTGTGAATGAACTGCAGCGCTTTCCTGTTCTTAGAAAGCGTATGG
ATGAGGTCATCGGGAACTTTCTGCGAGAAGGCCTTGAGCCCTCCGAGACA
ATGATTGGACATATCATTGAAATGGAGATGGACTATATAAACA
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